Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1748 ATGAGCATGTCGGGATCTGACATGGTAACCAGGGACCAATTCTTGGTTGGGATGCATAACCCTCAATCCCAACCTCAACAACAACAACAACCTCAACTTCATCAAAACATGCGTATGGACTATGCTGCTGCTGATGGGGCTGGGGTATTCGCCTCCCCTACCATCAACATCAACAACATCAACGGCGGCGAATCCTCTCCAGTGAGTGTGCCTCCTGGCTTGGGCCTGGGCCAGACCCATCCCCAGGCCATGGTGGATAACTCCACTGAGACACTCAAGAGAAAGAGGGGAAGACCCAGGAAGTACGGGCCTGATGGTGGCATGAATTTGAGCTTGAACACTACCTCTCCTCCTGGTGGCGCCACGGTGCCTGTTGGCCATTCCGGTGGGGCATTTCCGGCGGCTCCTCTCTCTGATTCTGCCTCAGCCGGTACCGGGAAGCGTAGGGGCAGACCTCGTGGTTCTGTTAACAAGAACAAGAAAAACTCAAAGTTTTCTGGGCCAGGAGGTTTCTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGTCAATTTCCCAGAGTGGTTCAAGAAATATTTGCATTTTAAGTGCAAATGGATCCATATCTAATGTGACACTTCGACAGCCTGCATCGTCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCTTATCACTTGGTGGTTCTTTGTTTCTTACTGAAAATGGTTCTCTTGGCGAAAGGAGTGGGGGCCTGAGTGTGTCCTTGTCAGGGCCAGACGGCCGCGTCTTGGGGGGTGGAGTTGCAGGTCTTTTGGTGGCTGCCTCCCCTGTTCAGATTGTTTTGGCTAGTTTTGTTTCCGATGGCAAGCCATCCAAGTCTGCAAAGCGGATGAGGAATGTATCTGCAGCAGAAAAGGTTTCAACAGCTGGTGGCCAAAGCAGCTCACCATCAAGGGGCACTCTGAGTGAATCTTCAGGTGGGGTCGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGACTGCATCAACAATATCAACAATATCAACAGCACCACCCCAACGCCAGGCTTTTCAGGCATGCCCTGGAAATAA 1101 0.5132 MSMSGSDMVTRDQFLVGMHNPQSQPQQQQQPQLHQNMRMDYAAADGAGVFASPTININNINGGESSPVSVPPGLGLGQTHPQAMVDNSTETLKRKRGRPRKYGPDGGMNLSLNTTSPPGGATVPVGHSGGAFPAAPLSDSASAGTGKRRGRPRGSVNKNKKNSKFSGPGGFFTPHVITVKAGEDLSARIMSISQSGSRNICILSANGSISNVTLRQPASSGGTVTYEGRFEILSLGGSLFLTENGSLGERSGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDGKPSKSAKRMRNVSAAEKVSTAGGQSSSPSRGTLSESSGGVGSGSPLNQSTGDCINNINNINSTTPTPGFSGMPWK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1748 366 MobiDBLite consensus disorder prediction 1 35 - -
Vra5g1748 366 CDD DUF296 173 287 IPR005175 -
Vra5g1748 366 MobiDBLite consensus disorder prediction 308 360 - -
Vra5g1748 366 ProSiteProfiles PPC domain profile profile. 169 311 IPR005175 -
Vra5g1748 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 171 289 - -
Vra5g1748 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 10 347 - -
Vra5g1748 366 MobiDBLite consensus disorder prediction 16 35 - -
Vra5g1748 366 MobiDBLite consensus disorder prediction 292 366 - -
Vra5g1748 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 347 IPR039605 GO:0003680
Vra5g1748 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 174 288 IPR005175 -
Vra5g1748 366 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Vra5g1748 366 SMART AT_hook_2 146 158 IPR017956 GO:0003677
Vra5g1748 366 Gene3D - 174 302 - -
Vra5g1748 366 MobiDBLite consensus disorder prediction 86 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1748 Vra-Chr5 23630860 23634654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1748 84 366 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 50.847 2.53e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1748 - - pvu:PHAVU_009G008300g 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1748 5 23630860 23634654 Vra5g1748 5 23630860 23634654 ECH