Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1745 ATGCTGGCAATGGAAGAGGTACTGTGTGAACTCAGTGATCATGAAAAGAGAAACGAGCAAGGTCTGCCACCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTTATAACCTTTTACCTCGCTTCAAAAGTCTTTAATGGCTGCTTCACCACCGTCAAGTTTGCCGAGGTTGATCTCAATAGATGCGAGCCTTGGGAACTTCCAGATGTGGCGAAGATGGGGGAGAGAGAGTGGTATATGTTCAGCTTGAGGGACAGAAAATACCCGACTGGACTGAGAACAAACAGGGCGACAGGAGCTGGGTACTGGAAAGCAACTGGGAAGGACAAGGAAGTGTTCAGTGCATCAAGTGGAACCCTACTTGGGATGAAGAAGACACTTGTTTTTTACAAAGGAAGGGCCCCTCGTGGAGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTGGACGGTGACTTTTCCCTTCCTCACCCTCACCCTCATCACATCTCAAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCCGGGGAAAAGAGGACTTCATTGCTTCAAAACCAAGGACAAGGACATTCAGATGCTTCTTCTTCCCCAACAAAAACTTCTTTACCTCCTTTACTTCCCAGCTCAACTTCCTTTCCATTGGAACTAGAAGACCAAAATCACCTCTCTCATTCTCACCCTTATCTTTTCCCATTCCATGCATCACCGCAACTCACGAACACCAGAAACCATCCATCATTTTCTGACCTATTCTTCAAGCCCCCGCCCCTCTCACAACAACAAAACTGCACCCTCAAGGCCAAGGAAAAAACAGCTCCAAAAGTAATCAAAACGGAGGAGGCTACAGCATTGTATCAGTACCATTTACTAGGTGACACTGACAACCTGCGGTTAAACCAAAACCTAAGTAATTTCCCAAACCCTTTCGCTGATGTTGAGGTGGATGGTGCTGAGCTGATGGCATTCGCAGGAGGTCCAAATGGTGAAGTTGGGGACATGTCCCATTCGACAGCCTTCAAAAGGGTAGGGTTGCAGCAGCTCATAGATGCTGCTCATATCGGAATAGATTCTTGGCCCCTGGCCCAGCATGTTTAA 1101 0.4714 MLAMEEVLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGCFTTVKFAEVDLNRCEPWELPDVAKMGEREWYMFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVFSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSLPHPHPHHISKEEWVICRIFHKSGEKRTSLLQNQGQGHSDASSSPTKTSLPPLLPSSTSFPLELEDQNHLSHSHPYLFPFHASPQLTNTRNHPSFSDLFFKPPPLSQQQNCTLKAKEKTAPKVIKTEEATALYQYHLLGDTDNLRLNQNLSNFPNPFADVEVDGAELMAFAGGPNGEVGDMSHSTAFKRVGLQQLIDAAHIGIDSWPLAQHV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1745 366 ProSiteProfiles NAC domain profile. 22 176 IPR003441 GO:0003677|GO:0006355
Vra5g1745 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3-LIKE 10 224 - -
Vra5g1745 366 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Vra5g1745 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 224 - -
Vra5g1745 366 Gene3D NAC domain 31 180 IPR036093 GO:0003677|GO:0006355
Vra5g1745 366 SUPERFAMILY NAC domain 17 176 IPR036093 GO:0003677|GO:0006355
Vra5g1745 366 MobiDBLite consensus disorder prediction 184 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1745 Vra-Chr5 23618503 23621804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1745 1 188 NAC Transcription Factor Family AT1G76420 73.016 3.82e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra5g1745 NAM 8.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1745 - - gmx:100780313 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1745 5 23618503 23621804 Vra5g1745 5 23618503 23621804 ECH