Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1742 ATGACTCGTCCCTTCAGATATTTAGGCGAGCGCAACTCGTCCAACGACTCCGCCGTTGTCGACTCCGACTTCGTCGTCATCCTCGCCGCCCTCCTCTGCGCACTCATCTGCGTCCTCGGCCTCGTCGCCGTCGCGCGCTGCGGCTGTCTCCGCCGCCTCCGCTTCTCCTCTGCCCCCACTCCACAGCCTCCTCCCGCTGCTGCCAACAAAGGCGTCAAGAAAAAGGTCCTCCGCTCCCTCCCCAAGCTCACCGCCACAGCCGAATCCGCAGGTAAGTTCGCCGATTGCGCGATCTGCCTCTCGGAGTTCGCCGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGACATGGATTCCATGTTAGCTGTATCGACGCCTGGCTCAGATCGCACTCCTCGTGTCCATCGTGCCGTCAGATTCTGGTAGTTACTCGGTGCGACAAGTGCGGTGGGATCCCGGTTCCGTCGAGCTCCAGCTCCGCGCCTCCGCCGCAGTCGGAATCCGAGGCCAGATTCAAGGTAAGGGAGGATAACGGCAATAGGTTCTTGCCTTAG 555 0.6198 MTRPFRYLGERNSSNDSAVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRFSSAPTPQPPPAAANKGVKKKVLRSLPKLTATAESAGKFADCAICLSEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVTRCDKCGGIPVPSSSSSAPPPQSESEARFKVREDNGNRFLP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1742 184 Pfam Ring finger domain 95 138 IPR001841 -
Vra5g1742 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 142 IPR013083 -
Vra5g1742 184 PANTHER RING-H2 FINGER PROTEIN ATL8 1 176 - -
Vra5g1742 184 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Vra5g1742 184 MobiDBLite consensus disorder prediction 154 184 - -
Vra5g1742 184 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 176 - -
Vra5g1742 184 SMART ring_2 96 137 IPR001841 -
Vra5g1742 184 SUPERFAMILY RING/U-box 80 143 - -
Vra5g1742 184 MobiDBLite consensus disorder prediction 169 184 - -
Vra5g1742 184 CDD RING-H2_PA-TM-RING 95 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1742 Vra-Chr5 23591467 23592485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1742 5 184 C3H Transcription Factor Family AT1G20823 63.402 2.13e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1742 - - gmx:100794614 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1742 5 23591467 23592485 Vra5g1742 5 23591467 23592485 ECH