Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1733 ATGAATTCGTTTCGGGTGGTTTGTTGGGTGGTGTGGTGTCTGGGATTTGTGAGGGCTGCAAACGTGTCGTCCTCGAGACCCGCCATCGTCAACATTGGAGCAATCTTCAACCTCGATTCTATTCTAGGGAAAGTGGCTAAAATTACATTGGAGGAAGCCGTGAAAGATGTTAACGCCGACACTAGCATTCTACATGGAACTAAAATTGTTCTCACTATGCAAAATTCCAATTACAGCGGTTTCTTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTTGTTGCTATAATAGGACCACAATCTTCTGTGGTTGCGCATATAATATCCCATGTTGCAAATGAACTACGAGTTCCTTTGTTGTCATTTGCCGCAACAGACCCTACCCTGACATCGCTGCAATTTCCTTTCTTTGTGAGGACAACACAGAGTGATCTGTACCAAATGAAGGCTGTTGCTGAAATCATTGATTACTATGGTTGGAAGGAGGTGATTGCAATATACGTGGATGATGATTATGGACGGAATGGTGTGGCTGCTTTGGACGATGAACTAGCTGCCAGGCGCTGTAGAATCTCCTTCAAGGAAGGGATTAATTCCGGAACTCAAGTCAACCGAGGAGAAATTACTAGTTTGCTAGTGAAAGTGGCACTGATGCAGTCTCGAGTCATTGTTCTCCATGCACAAACTGATTATGGTTTTATGGTTTTCAATGTGGCGCGTTATCTTGGGATGACAAACAATGGCTATGTGTGGATAGTCACAGACTGGCTCTCTTCACTTTTGGATTCTGCTTCTCTCCCTTCAGAAACAATGGATGTTCTCCAAGGAGTACTTGTTCTGCGCCAGCATACACCTGATTCAGATAGAAAAAGGGGATTTGTCTCTCGGTGGAACAAGTTGACCGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTACGCTTATGATTCTGTGTGGCTTGTTGCACGGGCCCTTGATGCTTTTTTCAGTCAGGGTGGGGTTCTTTCGAGTACGAATTACACAAGTTTGGGTGGTGCTGCTGATAAGGGAAGTGATTTGAACCTTGATGCAATGAGCATTTTTGACAACGGAACGCTTCTGCTGAACAACATATTGCAGAGTGATTTTGTTGGACTATCAGGTCGAATGAAATTTGAAGCAGATCGATCTCTCGTTCATCCTGCCTATGACGTGCTTAATGTGGTTGGAACTGGCCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTTTGTCAATTGTATCTCCTGAGATACTGTATGCAAAGCCACCTAATAGATCTAGTGCGAATCAGAAGCTTTACAGTGTGATATGGCCTGGAGAAACATTATCTAAACCCCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGGATTGGTGTGCCTATCAGAGTCAGTTATCGTGAATTTGTTTCACCAGTGAAGGGAACTGAGATGTTTAAAGGTTTTTGTGTTGATGTATTCACAGCAGCTCTGAACTTGTTGCCTTATGCCGTTCCTTACCAATTTGTTCCATTTGGAGACGGACACAAAAATCCAAGCTACACAGAACTTGTCCGTTTGATCACAACTGGTTACATTTTCTTGGTACAGTACTTTGATGGTGCCATTGGTGACATCGCTATTGTCACAAATCGGACAAGGGTTGTAGATTTTACACAACCGTATGCAGCATCGGGACTTGTTGTGGTGGCCCCATTTACAAAAATTAATTCTGGTGGTTGGGCTTTCCTGCAGCCATTTACTACTCTTATGTGGATTGTCACTGCATGTTTCTTCCTTTTCATTGGGATAGTTATATGGATTCTGGAACACAGGATCAATGATGAGTTCAGAGGTCCACCTAGACAGCAAATTATAACCTTGTTATGGTTTAGCCTGTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTGGTCTTGGTCGGTTTGTGATGCTTCTATGGCTATTTGTGGTCTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAACAGTTATCTTCTCCTATCAGTGGAATAGATAGTTTAAAGGCTGGTGATGAACCTATAGGTTACCAAGTTGGTTCATTTGCAGAACATTACCTGACTGAAGATATTGGAATATCCAAATCCAGGCTTATTGCCCTTGGAACTCCAGAAGAATATGCTATGGCCCTAAAGCTTGGTCCTAAAAAAAGAGGAGGTGTTGCTGCTATTGTTGATGAACGACCTTATGTTGAAATCTTCTTATCAAGCCAGTGCACCTTCAGAATTGTTGGTCAGGAGTTCACCAGAAGTGGCTGGGGCTTTGCATTCCCTCGGGACTCCCCTTTGGCCGAGGATATGTCAACAGCCATTCTACAACTCTCTGAAACGGGTGATCTACAGCGGATTCATGACAAGTGGATGACACGAAGCTCTTGTTTAGACAATGCTGAAATCGACTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTATTTCTCATTTGCGGGATAGCTTGTTTTGTTGCTCTTCTTTTGCATTTTTTGCAGATCATGTTCCAGTTATGGAAATCTCCTCCTTCTGAACCTCCATCTTCTACTACTGCCTGGTCAATTTCTGGTCGTTTTCAGAGATTTCTCTCGCTCATTGACGAGAAAGAAGATCCATCAAGGAGTAATGGAAGAAAGAGAGAAAGATCACTTGATGATCAACTGGTAAGGTAG 2742 0.4344 MNSFRVVCWVVWCLGFVRAANVSSSRPAIVNIGAIFNLDSILGKVAKITLEEAVKDVNADTSILHGTKIVLTMQNSNYSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLTSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGINSGTQVNRGEITSLLVKVALMQSRVIVLHAQTDYGFMVFNVARYLGMTNNGYVWIVTDWLSSLLDSASLPSETMDVLQGVLVLRQHTPDSDRKRGFVSRWNKLTGGSLGLHSYGLYAYDSVWLVARALDAFFSQGGVLSSTNYTSLGGAADKGSDLNLDAMSIFDNGTLLLNNILQSDFVGLSGRMKFEADRSLVHPAYDVLNVVGTGLRRVGYWSNYSGLSIVSPEILYAKPPNRSSANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSYREFVSPVKGTEMFKGFCVDVFTAALNLLPYAVPYQFVPFGDGHKNPSYTELVRLITTGYIFLVQYFDGAIGDIAIVTNRTRVVDFTQPYAASGLVVVAPFTKINSGGWAFLQPFTTLMWIVTACFFLFIGIVIWILEHRINDEFRGPPRQQIITLLWFSLSTLFFSHRENTMSGLGRFVMLLWLFVVLILTSSYTASLTSILTVQQLSSPISGIDSLKAGDEPIGYQVGSFAEHYLTEDIGISKSRLIALGTPEEYAMALKLGPKKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAEDMSTAILQLSETGDLQRIHDKWMTRSSCLDNAEIDSDRLQLKSFWGLFLICGIACFVALLLHFLQIMFQLWKSPPSEPPSSTTAWSISGRFQRFLSLIDEKEDPSRSNGRKRERSLDDQLVR* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1733 913 CDD PBP1_GABAb_receptor_plant 31 423 IPR044440 -
Vra5g1733 913 Gene3D - 780 813 - -
Vra5g1733 913 PRINTS Metabotropic glutamate GPCR signature 98 124 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vra5g1733 913 PRINTS Metabotropic glutamate GPCR signature 130 149 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vra5g1733 913 PRINTS Metabotropic glutamate GPCR signature 149 165 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vra5g1733 913 PRINTS Metabotropic glutamate GPCR signature 165 182 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vra5g1733 913 PIRSF IGluLR_plant 1 910 IPR017103 -
Vra5g1733 913 Pfam Bacterial extracellular solute-binding proteins, family 3 543 815 IPR001638 -
Vra5g1733 913 Gene3D - 145 420 - -
Vra5g1733 913 SUPERFAMILY Periplasmic binding protein-like I 25 459 IPR028082 -
Vra5g1733 913 CDD GluR_Plant 465 813 - -
Vra5g1733 913 PANTHER GLUTAMATE RECEPTOR 3.3 16 901 - -
Vra5g1733 913 Pfam Receptor family ligand binding region 51 405 IPR001828 -
Vra5g1733 913 Pfam Ligand-gated ion channel 816 846 IPR001320 GO:0015276|GO:0016020
Vra5g1733 913 Gene3D - 460 581 - -
Vra5g1733 913 Gene3D - 582 712 - -
Vra5g1733 913 Gene3D - 744 779 - -
Vra5g1733 913 SMART GluR_14 468 816 IPR001320 GO:0015276|GO:0016020
Vra5g1733 913 MobiDBLite consensus disorder prediction 891 913 - -
Vra5g1733 913 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 901 - -
Vra5g1733 913 SUPERFAMILY Periplasmic binding protein-like II 443 816 - -
Vra5g1733 913 Gene3D - 49 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1733 Vra-Chr5 23548252 23552671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1733 13 909 Ion Channels AT1G42540 64.168 0.0 1230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1733 K05387 - gmx:102661260 1581.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1733 5 23548252 23552671 Vra5g1733 5 23548252 23552671 ECH