Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1732 ATGCATGATTTGGGAGTGGTTATGCCTGTGGGAATGGATTTTCCTCCTCCTTTTGTTGTGATAGAGGACAAAGACAGTGCATTTGCAATGGAAGATGATAAATCGGGAGATTTGGATAATCTAAAACCAATAGTCAAGGGGAAGCCTCCCCGGCATGTTTCTAGTTTGAGGCACAGCGTTAGCACCACCAGATTGATGGCAGTAGCAGATTTGAGTTTGGAGGTGGGGGTTACTGGAAGCAAGTCATCTTCTGAAGAAAAGACGGAATTTTTACCAATATTTCGGTCAGGAAGTTGTGCTGAAAGAGGACCTAAACAGTATATGGAAGATGAACACGTATGCATTGATGATCTTATTCAGCATATAGGTCCCGCCTCAACTATTCCTTTACCTGGAGCTTTTTATGGGGTGTTTGATGGCCATGGAGGTACAGACGCAGCTGTGTTCATAAGAAATAACATCCTCAAATTCATAGTTGAGGACTCCCATTTTCCAACTTGCGTGGGGCAGGCAATTACAAGTGCGTTTCTTAAAGCAGATTATGCATTTGCAGATTCTAGTTCTCTTGATATCTCCTCTGGGACCACTGCTTTAACTGCTCTTGTATCCGGAAGGACCATGATAGTTGCCAATGCCGGGGACTGCAGAGCTGTACTGGGGAGGCGAGGTAGAGCAATTGAGATGTCAAAAGACCAGAAACCAGATTGCACTTCGGAAAGGCTAAGGATTGAGAAACTTGGTGGAGTGGTGTACGATGGTTACCTGAATGGGCAGTTATCTGTTTCCCGTGCCTTGGGAGACTGGCACATGAAGGGTCCAAAGGGTTCTGCCTGCCCCTTGAGTTCTGAGCCAGAGCTGCAGGAAATCATCCTCACTGAGGATGACGAGTTCTTGATCATGGGCTGTGACGGCCTATGGGATGTAATGAGTAACCAATGTGCTGTGACCATGGCAAGGAAAGAACTAATGATACATAATGATCCTCAAAGGTGTTCAAGAGAGCTGGTCAGAGAGGCTCTAAAGCGTAACTCGTGTGATAATTTGACTGTCATAGTGATATGTTTCTCCCCAGACCCTCCTCCTAGGATAGAGACACCTCCTTCTCGGGTCAGGAGGAGTATATCAGCAGAAGGCCTCAATTTACTTAAGGGTGTTTTGGATTGTTAG 1167 0.4576 MHDLGVVMPVGMDFPPPFVVIEDKDSAFAMEDDKSGDLDNLKPIVKGKPPRHVSSLRHSVSTTRLMAVADLSLEVGVTGSKSSSEEKTEFLPIFRSGSCAERGPKQYMEDEHVCIDDLIQHIGPASTIPLPGAFYGVFDGHGGTDAAVFIRNNILKFIVEDSHFPTCVGQAITSAFLKADYAFADSSSLDISSGTTALTALVSGRTMIVANAGDCRAVLGRRGRAIEMSKDQKPDCTSERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSSEPELQEIILTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVICFSPDPPPRIETPPSRVRRSISAEGLNLLKGVLDC* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1732 388 PANTHER PROTEIN PHOSPHATASE 2C 8 377 IPR015655 GO:0004722|GO:0006470
Vra5g1732 388 SMART PP2C_4 85 353 IPR001932 -
Vra5g1732 388 SMART PP2C_SIG_2 110 355 IPR001932 -
Vra5g1732 388 Pfam Protein phosphatase 2C 96 347 IPR001932 -
Vra5g1732 388 CDD PP2Cc 94 355 IPR001932 -
Vra5g1732 388 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 8 377 - -
Vra5g1732 388 SUPERFAMILY PP2C-like 89 356 IPR036457 -
Vra5g1732 388 ProSitePatterns PPM-type phosphatase domain signature. 134 142 IPR000222 GO:0043169
Vra5g1732 388 Gene3D - 73 358 IPR036457 -
Vra5g1732 388 ProSiteProfiles PPM-type phosphatase domain profile. 95 355 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1732 Vra-Chr5 23540982 23544401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1732 10 387 PP2C-type Phosphatase Gene Family AT2G33700 72.063 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1732 K14803 - gmx:100778015 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1732 5 23540982 23544401 Vra5g1732 5 23540982 23544401 ECH