Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1728 ATGGCTGCGAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCAGATGATAGTTTTCATTTTGAGAGGTTGCACATTGAGCCTCTGTATGATGCTTTTGTATGTCCATTGACGAAGCAAGTGATGCGTGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAGTGTAGGGAGAGTGGAAGGAGACTGGTTTGCCCTTTGACTCTTCAGGAGTTAAGAAGCGCAGAACTGAATCCAAGCATGGCTTTGCGTAACACCATTGAAGAGTGGACTGCCAGGAATGAAGCTGCACAGCTGGACATGGCTCGCAGGTCATTGAATATGGCGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTGCAGTACATCTGCCGAAGAAGTCGATCAAACAAACACACTGTCCGCAATGCAGGGCTTATACCAATGATTGTTGACATGCTGAAGAGTGGAAGCCGTAAGGTTCGATGTAGAGCTCTGGAAACCCTTAGAATCGTGGTAGAAGAAGATGATGAGAACAAGGAATTGTTGGCTGAAGGGGATACTGTGCGTACTATAGTGAAATTCCTTTCCCACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAACTCTCGAAGTCTGCTACCCTCTGTGAGAAGATTGGTTCAATCAACGGAGCCATTCTAATATTAGTAGGGATGACAAGCAGCAATTCAGAAGATCTTCTCACTGTCAATAAGGCTGAGGAAACATTGTCGAATCTGGAGAGGTATGAGGCTAATGTTCGGCAGATGGCTGAATGTGGTAGATTGCAGCCTCTTCTTACCCAACTTCTCGAAGGTCCGCCAGAAACCAAACTCGCCATGGCGGGATTCCTTGGGGAGCTGGTTTTAAACAATGATGTTAAAGTTCTTGTTGCTAGTAGAGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAATCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGTGACACAAGCGCAAAGATATTAATAGAGGCCGGAATACTTGCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAACCTGCTTCCCACACGATTGAAAGAGATCTCTGCTACGATTCTTGCCAGTGTTGTAAACTCTGGAGAAGACTTCTATTCCATTTCATTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAACACTGGTCCAGCCATAGAGTGCAAACTACTACAAGTTCTTGTTGGACTTACTACTTCTCCAACTACAGTTCTGAGTGTTGTATCTGCTATCAAAAGCTCTGGTGCCACAATCAGTCTAGTTCAGTTCATTGAAGCACCACAGAAAGATCTGCGTCTGGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCATATGGGTCAGGAACTAACTGATGCACTACGTGGCTCAGTTGGACAGCTTGGAAGTCTAATAAAAGTCATATCAGAAAATACAGGGATCAGTGAAGAGCAGGCAGCGGCAGTCGGCCTTTTAGCCGAACTACCCGAAAGGGACTTGGGCCTCACAAGACAGCTACTAGATGAAGGTGCCTTTGTGATGGTCATATCCAGGGTGATTGCCATCAGACAGCGAGAGATCAGAGGCAATCGCTTCATCACACCATTTCTTGAAGGGCTTGTGAAGATTGTTGCAAGGGTTACTTATGTCTTGGCTGAAGAGCCTGATGCCATTGCACTCTGCCGTGACTACAACCTTGCTGCACTCTTTATTGACCTGCTTCAGTCCAATGGACTGGACAACGTGCAGATGGTATCTGCCACAGCTCTGGAGAATCTATCCATAGAGTCAAAAAACTTAACCAAATTACCGGAGGTGCCACCGCCCAGCTTTTGTGCTTCGATGTTTTCATGCTTCAGCAAGCAGCCAGTGATAAGTGGATTGTGTAGGCTCCACAGAGGAATATGCTCTTTGAAGGAAACGTTTTGCCTGTATGAAGGGCAGGCAGTGCCCAAGTTAGTAGGACTACTGGACCACACAAATGTAAATGTGGTTGAGGCAGCACTGGCTGCATTATCGACTTTGATAGATGATGGAGTAGACATAGAACAAGGGGTGGCAATTTTGGTTGAAGCAGAGGGAGTGAAGCCTATACTTGATGTGCTACTTGAGAAGAGAACAGAGACATTGAGAAGGAGAGCAGTTTGGGCAGTGGAGAGACTGTTGAGAACAGATGATATAGCTTGTGAGGTTTCTGCAGACCAGAATCTGAGCACTGCACTCGTGGATGCATTCCAACATGGTGATTATCGAACTAGACAGACCGCTGAGCGTGCTCTCAAACATGTTGATAAGATACCAAACTTCTCAGGAATCTTTCAGAACCTAGGATGA 2442 0.4517 MAASWDGSNDPGSQSDDSFHFERLHIEPLYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRESGRRLVCPLTLQELRSAELNPSMALRNTIEEWTARNEAAQLDMARRSLNMASPENETLQALKYVQYICRRSRSNKHTVRNAGLIPMIVDMLKSGSRKVRCRALETLRIVVEEDDENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSATLCEKIGSINGAILILVGMTSSNSEDLLTVNKAEETLSNLERYEANVRQMAECGRLQPLLTQLLEGPPETKLAMAGFLGELVLNNDVKVLVASRVGSSLINIMKSGNMQSREAALKALNQISSCDTSAKILIEAGILAPLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFYSISFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGQELTDALRGSVGQLGSLIKVISENTGISEEQAAAVGLLAELPERDLGLTRQLLDEGAFVMVISRVIAIRQREIRGNRFITPFLEGLVKIVARVTYVLAEEPDAIALCRDYNLAALFIDLLQSNGLDNVQMVSATALENLSIESKNLTKLPEVPPPSFCASMFSCFSKQPVISGLCRLHRGICSLKETFCLYEGQAVPKLVGLLDHTNVNVVEAALAALSTLIDDGVDIEQGVAILVEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIACEVSADQNLSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFQNLG* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1728 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 811 - -
Vra5g1728 813 CDD RING-Ubox_PUB 33 80 IPR045210 -
Vra5g1728 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Vra5g1728 813 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 684 711 IPR000225 GO:0005515
Vra5g1728 813 SUPERFAMILY ARM repeat 119 444 IPR016024 -
Vra5g1728 813 SMART arm_5 181 221 IPR000225 GO:0005515
Vra5g1728 813 SMART arm_5 717 759 IPR000225 GO:0005515
Vra5g1728 813 SMART arm_5 590 631 IPR000225 GO:0005515
Vra5g1728 813 SMART arm_5 139 179 IPR000225 GO:0005515
Vra5g1728 813 SMART arm_5 347 392 IPR000225 GO:0005515
Vra5g1728 813 SMART arm_5 265 306 IPR000225 GO:0005515
Vra5g1728 813 SMART arm_5 672 713 IPR000225 GO:0005515
Vra5g1728 813 SUPERFAMILY ARM repeat 406 799 IPR016024 -
Vra5g1728 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Vra5g1728 813 Gene3D - 573 804 IPR011989 -
Vra5g1728 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 116 IPR013083 -
Vra5g1728 813 Coils Coil 253 273 - -
Vra5g1728 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Vra5g1728 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 811 - -
Vra5g1728 813 SUPERFAMILY RING/U-box 23 110 - -
Vra5g1728 813 Gene3D - 315 486 IPR011989 -
Vra5g1728 813 Gene3D - 117 314 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1728 Vra-Chr5 23521847 23527389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1728 2 813 U-box Gene Family AT1G76390 64.619 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1728 - - gmx:100789746 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1728 5 23521847 23527389 Vra5g1728 5 23521847 23527389 ECH