Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1726 ATGGAGGCAGAGCATCATCAAGATGCCTCAATCGCTATCGGAAGCCTTTACGTTAAAGTGATGACCGACGAACAAATGGAACTGCTGAGGCAACAGATATCTGTCTACGCCACCATCTGCGAACAGCTTGTTGAGATGCACAAAGCAATCACCACTCAACAGGACCTCGCAGGACTGAGGCTGGGTAATTTGTACTGTGATCCGTTGATGGCGTGTTCTGGACACAAGATAACTGCGAGGCAGCGTTGGACTCCAACGCCTCTGCAACTTCAAATTCTGGAGCGAATTTTTGATGAGGGAAATGGCACTCCAAGCAAGCAGAAGATCAAGGAGATAACAATTGAACTGGGGCAACATGGTCAAATATCAGAGACAAATGTGTATAACTGGTTCCAGAACAGAAGGGCTCGTTCAAAGAGGAAGCAACTCGCTCCCGCAGCAAATGTTGCAGAGCCAGAAACCGAGACGGAAGTCGATTCTCCGAGAGAGAAAAAGATACGCGCCGCCGAGAGCGTTCAGGTTGTTCAACCCTTTGAGAATTCATCACCTCATAGGATCAAGGACATGTACATCCACAGTCCTGACTTAGGATTTGAGCAATTGATGAGTAAAATAGATGTTGCAGGCTGCTACGGCTCTTATTTTCTTTGA 651 0.4716 MEAEHHQDASIAIGSLYVKVMTDEQMELLRQQISVYATICEQLVEMHKAITTQQDLAGLRLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKEITIELGQHGQISETNVYNWFQNRRARSKRKQLAPAANVAEPETETEVDSPREKKIRAAESVQVVQPFENSSPHRIKDMYIHSPDLGFEQLMSKIDVAGCYGSYFL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1726 216 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 1 216 - -
Vra5g1726 216 CDD homeodomain 80 142 IPR001356 GO:0003677
Vra5g1726 216 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 216 IPR044559 GO:0003700
Vra5g1726 216 Gene3D - 81 145 - -
Vra5g1726 216 ProSiteProfiles 'Homeobox' domain profile. 76 141 IPR001356 GO:0003677
Vra5g1726 216 SMART HOX_1 78 145 IPR001356 GO:0003677
Vra5g1726 216 MobiDBLite consensus disorder prediction 141 163 - -
Vra5g1726 216 SUPERFAMILY Homeodomain-like 79 142 IPR009057 -
Vra5g1726 216 Pfam Homeodomain 80 140 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1726 Vra-Chr5 23504549 23505821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1726 16 172 Wox Gene Family AT4G35550 68.750 6.83e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra5g1726 Homeodomain 5.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1726 - - var:108342525 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1726 5 23504549 23505821 Vra5g1726 5 23504549 23505821 ECH