Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1716 ATGATGAGAGATGGTGGTGTGACATCATCATCTGCTTCCATGACGGAAGCTCCACCACCAGATGGAACAATAACAACAAAAACAATGGATTTTGACTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCTGTTGATGGATCTGACTTCTTGCCGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCCTGGCCTGCCTTGGAGACCAACCACAATGAATCCCAGGGTGCTGCTTTTGGGACACAACAAGAAGGCCACAACAACAACATGGTTAATGTTGTTGTTGGTTGTGGAGATGGTGGTGGTCAAGAGTTGCAGCCTGAAACTGTTACAACTGAAGGAACATCCGAAGGGGTGAAAAGATGGAGGTTTGCACCCACACCTGCTCCTGCACCTGGACCTTCGATAATGGAGAAGCTAATAAGGGCCCTCATGTGGATCAAAGACTACAATAGGAACAAAAACATGCTTATACAGATATGGGTGCCGGTTCATAGAGGGGGTAGACCGATTCTCGCAGCTAATGATATTCTGTTCTCACTCGATTCAAGGTCTGTAAACCTTGCAAAGTACCGCGAAATCTCTGTGAGGTACGAGTTTTCTGCGGAGGAGGGTGAGGTCAAGGAGTTGGTGCCAGCAGAGAAAGGTGGCTCGAAGGAATTGTTGCTAGGATTGCCCGGTAGAGTGTTCAGAGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGACGAGTATCCGCGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGGTCACTAGCAGTACCAATCTTTGAGCAAGGCAGCAAGATGTGCTTGGGAGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATACTCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGACCTTAGAAGCTCAAAACAATTAAATATTCATAATGTGAAGGCATGCAACAGATCCTACGAAGCTGTACTACCTGAGATTCAACTGGTGTTGAGATCTGCATGTGAAATGCATAGATTACCTTTAGCTCAAACTTGGATCCCATGTGTCCAACAAGGCAAAGAGGGATGCCGGCACTCAGAAGATAATTATCTACTTTGTATATCTCCCGTGGAGCATGCTTGCTATGTTGGTGATCCAAAAATCAGGCCTTTTCACGAGTCTTGCACTGAACATCACTTGTTGAAGGGTGAAGGTGTTGCTGGGGGAGCTTTTATCACCAACCAACCATGTTTCTCCGATGACATAACATCCTTAAGCAAGAAAGACTATCCACTGTCTCATCACGCGAGGTTGTTTGGATTGCGTGCTGCTGTTGCCATACGCCTTCGAAGCATCTTGAATGACACGGATGACTTTGTTTTAGAGTTTTTCTTGCCTGTAGATTGCAGTGACAGTGAAGAGCAGAGAAAGATGCTCACATCGTTGTCCATCATTATACAAAGGCTTTGTCGCAGCTTGCGGGTTATAAGTGATAAGGAATTGGAGGAAGCTAACTCGTCAATTGATGAAATGATTTTCCTTGCAGATGGTGGATTTGATAGGACTGTAATTTGTGAGGAACTTCAACACAAAGGGACGGTTGCCTTATGGAATACTGAAGAAAAATTAAGTGAAACAACTGGTAGAAAGTTCTCTGACCCAAGGCAGCAGCAGCAAGAAAGTCTTAATTTTAAAGGAAACCTTGATTGTGTCAGGGAGTGTTCTACTTCTGTTCAGGGTAACTTATCAAGTGTGGGAATGAGTAAAATGGGAGAGAGAAGACGGGCCAAAGGAGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCAGGAAGCTTAAAAGATGCTGCAAAGAATATCGGTGTGTGTACTACAACCTTGAAAAGGATCTGCCGGCAACACGGGATAAAGCGTTGGCCCTCCCGAAAGATAAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTGATTGACTCGGTTCAAGGTGCCTCTGGGGCATTTCAAATCGATTCCTTCTATTCAAACTTCCCAGAACTAGCTTCTCCAAACTTATCAGGAACAAGCATGTTCTCGACTCCGAATCAAACTGATAATCCAAACTCAATAAGCACGCAGCCTGATCCTGGCTCATTGAGTCCAGAAGGGACATCAAAATCTCCCTCTTCCTCCTGCGGTCAGAGTTCCATTTCAAGCCATTCCTGCTTCAGCATGTCAGAGCTACGGCAGCAGCATCACACAACCGACATTTCAGGTAACAAAGATTCCACCATGGCTGGTGAAGATTCTTTAGATGTTGCACTGAAGAGGATCAGAAGCGAAGCAGAGCTTAAAAGCCTGAATCAGGATAAAGCAGAGCTCTTGCCAAGATCACTGAGCCAGGAAACACTTGGTGAGCACCCAAAAAACCAGTATGAACGACCCTTATTGAAAACAAGTAGCAAGGTGGATGCACACAGAGTAAAAGTCACATACGGTGATGAAAAAACTCGGTTTCGGATGCCCAAGAACTGGGGCTATGAAGATCTTATGCAGGAAATTGGTAGGAGATTTAATGTGAGTGAAATGAGCAAATTTGATGTGAAATACTTGGATGATGACAGTGAGTGGGTACTACTCACTTGTGATGCTGACTTAGAGGAGTGCATTGATGTTTGTCGATCTTCTGAGAATGCCACCATCAAACTAAGCCTACAAATTTCTAGTCATAGTTTGAGAAGTTCTTTAGAATTTAGATAA 2763 0.443 MMRDGGVTSSSASMTEAPPPDGTITTKTMDFDYMGELFLDGCWLEASVDGSDFLPQSPSFSNPLFDPSFSWPALETNHNESQGAAFGTQQEGHNNNMVNVVVGCGDGGGQELQPETVTTEGTSEGVKRWRFAPTPAPAPGPSIMEKLIRALMWIKDYNRNKNMLIQIWVPVHRGGRPILAANDILFSLDSRSVNLAKYREISVRYEFSAEEGEVKELVPAEKGGSKELLLGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGSLAVPIFEQGSKMCLGVIEVVMTTQQINYTPELESVCKALEAVDLRSSKQLNIHNVKACNRSYEAVLPEIQLVLRSACEMHRLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPVEHACYVGDPKIRPFHESCTEHHLLKGEGVAGGAFITNQPCFSDDITSLSKKDYPLSHHARLFGLRAAVAIRLRSILNDTDDFVLEFFLPVDCSDSEEQRKMLTSLSIIIQRLCRSLRVISDKELEEANSSIDEMIFLADGGFDRTVICEELQHKGTVALWNTEEKLSETTGRKFSDPRQQQQESLNFKGNLDCVRECSTSVQGNLSSVGMSKMGERRRAKGEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPELASPNLSGTSMFSTPNQTDNPNSISTQPDPGSLSPEGTSKSPSSSCGQSSISSHSCFSMSELRQQHHTTDISGNKDSTMAGEDSLDVALKRIRSEAELKSLNQDKAELLPRSLSQETLGEHPKNQYERPLLKTSSKVDAHRVKVTYGDEKTRFRMPKNWGYEDLMQEIGRRFNVSEMSKFDVKYLDDDSEWVLLTCDADLEECIDVCRSSENATIKLSLQISSHSLRSSLEFR* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1716 920 PANTHER PROTEIN NLP4 26 916 - -
Vra5g1716 920 Gene3D - 184 311 IPR029016 -
Vra5g1716 920 SMART PB1_new 826 909 IPR000270 GO:0005515
Vra5g1716 920 ProSiteProfiles PB1 domain profile. 826 909 IPR000270 GO:0005515
Vra5g1716 920 MobiDBLite consensus disorder prediction 693 739 - -
Vra5g1716 920 Pfam RWP-RK domain 607 655 IPR003035 -
Vra5g1716 920 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g1716 920 ProSiteProfiles RWP-RK domain profile. 592 675 IPR003035 -
Vra5g1716 920 SUPERFAMILY CAD & PB1 domains 825 911 - -
Vra5g1716 920 PANTHER PROTEIN NLP8 26 916 IPR045012 GO:0003700
Vra5g1716 920 Pfam PB1 domain 827 907 IPR000270 GO:0005515
Vra5g1716 920 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g1716 920 Gene3D - 824 907 - -
Vra5g1716 920 CDD PB1_NLP 827 907 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1716 Vra-Chr5 23422183 23427061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1716 22 911 NLP Transcription Factor Family AT4G35270 41.632 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vra5g1716 PB1 2.9e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1716 - - gmx:100785135 1414.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1716 5 23422183 23427061 Vra5g1716 5 23422183 23427061 ECH