Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1701 ATGGCCTTCGCCACCACCGCGTTGCTCTCTTCTAACTTCCTCGGAAGGAAGGTTGTGGTATCACCGCCAACCCCCAAAACAACGAAACCGTCCACTCCGTTACCGTTTATTTTCAAGAGAACCATTTTTAACGCTCACAAACCCAATTCGGAAAAACTGAATTCCGCATCTTCACAAGCTGCTCTAGCGGCCCTTCTATTTTCCTCCGCCACTCTCTCTGCCACTCCACACGCCGTAGCCGCTGATAACGTCACCCCTCCACCCGTGATCGAAGCGCAACAGAGCCAATTAAACCCCTCCAACGCAACCTCCTCACCTTTCTCTTCGAACCTTCTCACAGCACCCAAACCCCAAGCCTCTTCCGACCTCCCCGAAGGCACCAATTGGCGTTACAGCGAGTTCTTGAACGCCGTTAAGAAGGGTAAAGTCGAGCGAGTCAGGTTCAGCAAAGACGGTTCCGCCCTCCAACTAACCGCCGTTGACGGCCGTCGTGCCTCCGTTATCGTCCCCAATGACCCCGACCTCATCGACATCCTCGCCATGAACGGCGTCGACATTTCCGTCGCCGAAGCCGAATCGCCTAACGGTTTGTTCAACATCATTGGCAATTTGCTCTTCCCCTTTCTAGCATTCGCTGGGTTATTCTTCCTCTTCCGCAGAGCCCAAGGCGGCCCCGGGGGGCCCGGTGGGCTTGGCGGGCCAATGGACTTCGGGCGGAATAAGTCCAAGTTTCAAGAAGTCCCCGAAACCGGGGTTACCTTCGGTGACGTGGCGGGCGCAGACCAAGCTAAGCTTGAGCTGCAAGAGGTTGTTGATTTTTTGAAGAACCCTGATAAGTACACTGCGCTGGGTGCGAAGATTCCGAAGGGGTGTCTTCTGGTGGGGCCACCGGGAACCGGGAAGACGCTTCTAGCTAGGGCTGTGGCGGGGGAAGCGGGAGTGCCGTTTTTCTCGTGCGCGGCTTCGGAATTCGTGGAGCTATTTGTGGGGGTTGGTGCGTCGAGGGTGAGGGATTTGTTTGAGAAGGCGAAGAATAAGGCGCCGTGCATTGTTTTCATTGATGAGATTGACGCCGTGGGGAGGCAGAGAGGGGCGGGGCTTGGAGGTGGCAACGATGAGAGGGAACAGACCATTAACCAGCTTCTGACGGAGATGGATGGGTTTTCTGGTAATTCTGGAGTTATTGTTTTGGCTGCAACTAACAGACCTGATGTTCTTGATTCGGCATTGTTAAGGCCTGGCCGGTTCGATAGGCAAGTTACTGTAGATAGACCTGATGTTGCTGGCAGAGTTAAGATCCTTCAGGTGCATTCAAGAGGAAAGGCGCTTGCAAAGGATGTTGACTTTGAAAAAATTGCAAGGAGAACACCGGGGTTCACTGGGGCTGATCTGCAGAATCTGATGAATGAAGCAGCTATTCTTGCAGCCAGGCGTGACCTCAAGGAAATCAGTAAAGATGAGATATCTGATGCACTTGAAAGGATCATAGCCGGACCTGAAAAGAAAAACGCCGTGGTCTCAGATGAGAAGAAGAAATTAGTAGCATATCATGAGGCCGGCCATGCTTTGGTTGGTGCTTTAATGCCTGAATATGACCCCGTAGCCAAGATATCGATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTCTTTGCTCCCAGTGAAGAGAGGCTCGAGTCTGGATTGTACAGCAGAAGCTACTTGGAAAATCAGATGGCTGTTGCTCTGGGTGGAAGGGTCGCTGAAGAGGTTATTTTTGGCCGGGAAAATGTCACCACCGGAGCATCAAACGACTTCATGCAAGTTTCTCGAGTGGCAAGGCAGATGGTTGAGAGATTTGGGTTCAGCAAAAAGATTGGACAAGTTGCTATTGGTGGTCCTGGAGGAAATCCCTTCTTGGGTCAACAGATGTCATCGCAAAAGGATTATTCCATGGCAACTGCCGATATAGTGGATGCGGAAGTAAGGGAACTGGTAGAGAGAGCATATTCTAGGGCAACAAATATCATCACTACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAAAAAGAAACTGTTGATGGTGAAGAGTTCATGAGTCTATTCATTGATGGAAAGGCCGAATTATATGTTGCATAA 2130 0.5103 MAFATTALLSSNFLGRKVVVSPPTPKTTKPSTPLPFIFKRTIFNAHKPNSEKLNSASSQAALAALLFSSATLSATPHAVAADNVTPPPVIEAQQSQLNPSNATSSPFSSNLLTAPKPQASSDLPEGTNWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRASVIVPNDPDLIDILAMNGVDISVAEAESPNGLFNIIGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRNKSKFQEVPETGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKNKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGRENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADIVDAEVRELVERAYSRATNIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1701 709 Gene3D Peptidase M41 501 704 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra5g1701 709 PANTHER METALLOPROTEASE M41 FTSH 54 701 - -
Vra5g1701 709 Gene3D - 425 500 - -
Vra5g1701 709 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 54 701 - -
Vra5g1701 709 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 709 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra5g1701 709 SMART AAA_5 287 426 IPR003593 -
Vra5g1701 709 Pfam AAA+ lid domain 446 489 IPR041569 -
Vra5g1701 709 CDD AAA 258 423 - -
Vra5g1701 709 Gene3D - 242 424 IPR027417 -
Vra5g1701 709 ProSitePatterns AAA-protein family signature. 394 412 IPR003960 GO:0005524|GO:0016887
Vra5g1701 709 Gene3D - 124 197 - -
Vra5g1701 709 MobiDBLite consensus disorder prediction 92 124 - -
Vra5g1701 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 495 IPR027417 -
Vra5g1701 709 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 198 698 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra5g1701 709 Pfam ATPase family associated with various cellular activities (AAA) 292 423 IPR003959 GO:0005524|GO:0016887
Vra5g1701 709 Pfam Peptidase family M41 505 698 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra5g1701 709 SUPERFAMILY FtsH protease domain-like 505 699 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1701 Vra-Chr5 23303332 23307124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1701 248 700 Miscellaneous Gene Families AT5G53170 49.890 3.74e-136 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1701 K03798 - gmx:100803824 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1701 5 23303332 23307124 Vra5g1701 5 23303332 23307124 ECH
Vra6g1985 6 36550656 36552797 Vra5g1701 5 23303332 23307124 PCT