Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1697 ATGCATCTCAAATTGATGGGAAGAGCCTCTGTTGCTGTTCTTCTCTTATCTCTTCTTGCTATTTCTCACTTTTCTGTGGCCGAAGATCCCTACAGATTCTTCAACTGGAATGTCACTTATGGCGACATTTTTCCTCTTGGTGTTCGCCAAAGGGGAATCTTAATCAACGGACAATTCCCAGGTCCAGATATTCATTCTGTTACCAACGACAACCTCATCATCAATGTCTTCAACAGTTTGGATGAACCTTTTCTTCTTTCCTGGAACGGGATTCAGCAGAGAAGAAACTCGTTCGAAGATGGTGTTTTTGGAACAACATGTCCGATTCCACCAGGGAAGAATTTCACTTACATTCTTCAAGTGAAGGATCAAATTGGAAGTTTTTATTACTTTCCATCTCTTGCGTTTCACAAAGCTGCCGGTGGTTTTGGTGGCATTAGGATTCTGAGCAGACCAAGGATTCCGGTGCCATTTCCCGATCCCGCCGGCGATTACACTGTTCTCATTGGAGATTGGTTCAAGTCCAACCACACGACTCTGAAAGCTCATCTTGATAACGGCAAGAAGCTTCCTTTCCCCGATGGAATACTTATCAATGGTCGTGGACCTAATGGGGTGACTTTCAACGTTGAACAAGGAAAAACTTACAGACTCAGAATATCAAATGTGGGGCTGCAACACTCCCTTAACTTTCGCATTCAGAATCACAAAATGAAGCTGGTGGAAGTGGAAGGAACGCACACTGTACAAACTACGTACTCCTCTCTTGATGTTCATGTGGGACAATCTTATTCAGTGTTGGTAACTGCAGATCAACCTGCTCAAGACTATTACATTGTGGCTTCCTCACGATTCTCCTCCAAGGTTCTCACCACCACTGCAGTTCTTCGCTATAGCAACTCTGCAGGCCCAGTATCAGGCCCACCCCCTGGTGGACCTACGATCCAGATTGATTGGTCCTTGAATCAGGCCCGCTCAATCAGGACAAACCTTACAGCAAGTGGACCAAGACCGAACCCGCAAGGATCGTATCATTACGGTCTGATAAACACGAGCAGGACCATCGTACTAGCGAGTTCTGCTGGTCAAGTGAACGGGAAACAAAGATACGCACTGAACAGCGTGTCTTATGTTGCCCCAGACACCCCTCTCAAGCTCGCAGATTACTTCAAAATCTCTGGCGTTTTCCGCCCCGGAAGCATATCTGACAGACCCACTGGTGGTGGCATCTACCTTGACACATCCGTTTTACAAACTGACTTCAGAGCTTTTGTGGAAATTGTCTTCCAAAACAACGAGAACATCGTTCAAAGCTATCATCTCGATGGCTACTCTTTCTTTGTCGTTGGCATGGATGGGGGACAGTGGACACCTGCTAGCAGGAACCAGTACAATCTCCACGATGCGGTTTCACGTTGTACAACACAGGTATATCCAATGTCATGGACTGCTATTTATGTTGCCCTTGACAACGTGGGAATGTGGAATTTGAGGTCTGAGTTTTGGGCACGACAATACCTTGGGCAACAGTTATATGTGCGCGTTTATACATCGTCAACCTCAATCAGAGACGAGTTTCCTGTTCCAAAGAATGCAATTCTTTGTGGCAGGGCGAGTGGTAGACACACGCGACCACTCTGA 1641 0.4625 MHLKLMGRASVAVLLLSLLAISHFSVAEDPYRFFNWNVTYGDIFPLGVRQRGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQQRRNSFEDGVFGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWFKSNHTTLKAHLDNGKKLPFPDGILINGRGPNGVTFNVEQGKTYRLRISNVGLQHSLNFRIQNHKMKLVEVEGTHTVQTTYSSLDVHVGQSYSVLVTADQPAQDYYIVASSRFSSKVLTTTAVLRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINTSRTIVLASSAGQVNGKQRYALNSVSYVAPDTPLKLADYFKISGVFRPGSISDRPTGGGIYLDTSVLQTDFRAFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGQWTPASRNQYNLHDAVSRCTTQVYPMSWTAIYVALDNVGMWNLRSEFWARQYLGQQLYVRVYTSSTSIRDEFPVPKNAILCGRASGRHTRPL* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1697 546 Pfam Multicopper oxidase 164 300 IPR001117 -
Vra5g1697 546 Pfam Multicopper oxidase 382 518 IPR011706 GO:0005507|GO:0016491
Vra5g1697 546 SUPERFAMILY Cupredoxins 348 537 IPR008972 -
Vra5g1697 546 CDD CuRO_3_AAO_like_1 380 500 IPR034275 GO:0005507
Vra5g1697 546 Gene3D - 347 542 IPR008972 -
Vra5g1697 546 Gene3D - 31 152 IPR008972 -
Vra5g1697 546 CDD CuRO_2_AAO_like_1 163 298 IPR034271 -
Vra5g1697 546 SUPERFAMILY Cupredoxins 26 178 IPR008972 -
Vra5g1697 546 Pfam Multicopper oxidase 38 151 IPR011707 GO:0005507
Vra5g1697 546 CDD CuRO_1_AAO_like_1 33 148 IPR034273 GO:0005507
Vra5g1697 546 Gene3D - 162 337 IPR008972 -
Vra5g1697 546 PANTHER MULTI-COPPER OXIDASE 12 539 IPR045087 -
Vra5g1697 546 SUPERFAMILY Cupredoxins 158 338 IPR008972 -
Vra5g1697 546 PANTHER MULTI-COPPER OXIDASE-LIKE PROTEIN 12 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1697 Vra-Chr5 23274519 23280714 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1697 - - gmx:100815570 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1697 5 23274519 23280714 Vra5g1697 5 23274519 23280714 ECH
Vra6g1994 6 36638163 36642266 Vra5g1697 5 23274519 23280714 PCT