Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1693 ATGGGAGACACAGAGAGTTGCAATAGCGGAATTTTGAACTCTGGCTGGAATCATCGATGTCCAAAACAGAGACAGAAGGTTGGAGTTTACAACGAGGTTTTGTGCAGGCTTAAGGAATTGAATGTCCCAGAAGCTGTGGTTCCTGGTTTTGAGGACGATCTTTGGGCGCACTTCTATCGCCTTCCCGCAAGGTATGCGTTGGATATGAATGTGGAGAGGGCAGAAGAAGTTCTTATGCATAAGAGGTTACTGGACATCGCCGGAGGCCCAACTACAGCAATCGGACCTGCAATTGAAGTCCGTCTTGTACAGGTTCGTTCTGCTTCTGCTTCTGCTGGTGGTTCTAGTAAATCTCTTCTTTTAAATTCACAAAGTAAAGTTTGTCCTGAAGATTCTGGTATTCCAGGCAGCATGAGCTTCCATCCTCCACCTGCCTTCGGTTCGTCATCTAATGTGGAACATAACACCCAGTTCTTACCAGTCCGAGACAGGGATAACTATTTGAGTTTTTATACACATTATTCTCGGCCAATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTGAGTCAGTTGACTTCCTTACTTTCTGAGACTGGGTTGGACATTCTAGAAGCACATGCTTTTTCGACAACAGACGGCTATTCGTTGGATGTTTTTGTTGTTGGTGGTTGGCCAATAGAGGAGACGAAGAAATTAAAACATGAACTAGCAAAGAAAATTCAGAAACTCCAGCAACATCAATTGAAAGAAAATGGAAGTCTTCCTACTAGTACTACTGCAAAGCAAGAGCAAATCGGGATGAACTTTATCTGGAGAATTGATGCCGGGCGTCTGAGATATGAAAAGAAAATTGCATCTGGACCTTTGAGTGATTTGTATAAAGGTTCATTCTGCAATCAAGATGTAGCTATCAAGGTTTTAAAGCACGAGAATTTGAATGAAAATATACAAAGGGAGTTTGCTCAGGAAGTGTATATCCTAAGCAAAATTCAGCACAAAAATGTTGTTAAATTTGTTGGCGCTTGTACAAAACCCCCAAACCTGTACCTGGTCACAGAATACATGCCTGGTGGAAGTATGTTCGACTTTTTGCATAAACAGAAGACAGCCCTTGCTCTTCCATCTTTACTCAAAGTGGCCATTGATGTTTCCGAAGGAATGAAATATTTGCATCAGAATAATATCATACATCGTGACCTTAAAGCGGCTAATCTTTTGATAGATGAGAATGGGGTAGTTAAGGTTGCTGATTTTGGTGTGGCTAGAGTGCACAATCAGTCTGGCATAATGACTGCAGAAACAGGAACTTATCGGTGGATGGCTCCAGAGGTTATTGAACATAGACCATATGATCACAAAGCCGATGTCTTTAGCTTTGCCATTGTGCTTTGGGAACTGCTCACAGGAAAGCTTCCTTATGAGCATTTGTCCCCATTGCAAGCAGCAGTAGGAGTGATCCAGAAGGGTTTAAGGCCTAAAATTCCAAGCCATACTCATTCAAAGTTAGTGGAATTGCTTCACTGGTGTTGGCACCACGATTCATCTTTGAGACCCAATTTCTCAGAAATTCTGGAATTTCTGCTACGTGTGACCAAGACGGTAAGTGTAGGAGGATTCTTGACAAATTTTGTGTTACATTCAAAAGAAAAATCGAAGCCTCTACACCACTACTTTTTCTTGAACAGGTTACTGGGGAATGTGAAGGCTAGGGAATGCATGAAAATTGTATTCACCAAACTCACTGTATGTACACATAGACATTTGTGA 1779 0.4165 MGDTESCNSGILNSGWNHRCPKQRQKVGVYNEVLCRLKELNVPEAVVPGFEDDLWAHFYRLPARYALDMNVERAEEVLMHKRLLDIAGGPTTAIGPAIEVRLVQVRSASASAGGSSKSLLLNSQSKVCPEDSGIPGSMSFHPPPAFGSSSNVEHNTQFLPVRDRDNYLSFYTHYSRPMHEITISTNDKPKLLSQLTSLLSETGLDILEAHAFSTTDGYSLDVFVVGGWPIEETKKLKHELAKKIQKLQQHQLKENGSLPTSTTAKQEQIGMNFIWRIDAGRLRYEKKIASGPLSDLYKGSFCNQDVAIKVLKHENLNENIQREFAQEVYILSKIQHKNVVKFVGACTKPPNLYLVTEYMPGGSMFDFLHKQKTALALPSLLKVAIDVSEGMKYLHQNNIIHRDLKAANLLIDENGVVKVADFGVARVHNQSGIMTAETGTYRWMAPEVIEHRPYDHKADVFSFAIVLWELLTGKLPYEHLSPLQAAVGVIQKGLRPKIPSHTHSKLVELLHWCWHHDSSLRPNFSEILEFLLRVTKTVSVGGFLTNFVLHSKEKSKPLHHYFFLNRLLGNVKARECMKIVFTKLTVCTHRHL* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1693 592 SMART serkin_6 282 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1693 592 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 8 535 - -
Vra5g1693 592 Gene3D Phosphorylase Kinase; domain 1 272 358 - -
Vra5g1693 592 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 535 - -
Vra5g1693 592 Pfam Protein tyrosine and serine/threonine kinase 283 531 IPR001245 GO:0004672|GO:0006468
Vra5g1693 592 SUPERFAMILY ACT-like 178 248 IPR045865 -
Vra5g1693 592 ProSiteProfiles ACT domain profile. 180 259 IPR002912 -
Vra5g1693 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Vra5g1693 592 Coils Coil 230 253 - -
Vra5g1693 592 Gene3D Transferase(Phosphotransferase) domain 1 359 554 - -
Vra5g1693 592 CDD STKc_MAP3K-like 288 531 - -
Vra5g1693 592 ProSiteProfiles Protein kinase domain profile. 282 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1693 592 SUPERFAMILY Protein kinase-like (PK-like) 261 531 IPR011009 -
Vra5g1693 592 PRINTS Tyrosine kinase catalytic domain signature 356 369 IPR001245 GO:0004672|GO:0006468
Vra5g1693 592 PRINTS Tyrosine kinase catalytic domain signature 393 411 IPR001245 GO:0004672|GO:0006468
Vra5g1693 592 PRINTS Tyrosine kinase catalytic domain signature 439 449 IPR001245 GO:0004672|GO:0006468
Vra5g1693 592 PRINTS Tyrosine kinase catalytic domain signature 458 480 IPR001245 GO:0004672|GO:0006468
Vra5g1693 592 PRINTS Tyrosine kinase catalytic domain signature 502 524 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1693 Vra-Chr5 23232868 23238597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1693 5 538 MAP Kinase Kinase Kinase AT4G35780 55.818 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra5g1693 PK_Tyr_Ser-Thr 2.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1693 - - var:108341177 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1693 5 23232868 23238597 Vra5g1693 5 23232868 23238597 ECH