Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1692 ATGACCCAAAGAGAGGAAGTTGTGCTTGATTTTGAAGACAACAATGGCCGCAGCAACAGCAAAGATGAAAATTTAGCATCGAAAGGTGTTGTTGTCAACGGTCAAAGTGACAAGCTTCATCAAGACTTGCAGGAAAAACGCAGAGGAAGTGAATCAATAAGAAAGAGAAAGCAGGATCAGCAAAAAAACGAAGAAATCCATCTCCAAACTTCACATTCACAAGAAAGCGTGGTGAGGTCTTCTTCGAACAATTCAACTCCGCGATACTCGTGGAAATCATCAATAAGCAGAACAAAGTCTCGGCTGATAGACCCTCCAGAAGAATCATGCGCAAATTCAGAGTCAAGTGAACAAAAAGCGGCAGAAAATGATGACAGTGTTGAGGACATGCCTGAAATTTATAAGAAAATGAGGTTTAGTGCGTTCTCACTGCTTCAGTGGCTATGTCTGGCCTTAATAATCGTAGCCTTGCTTTCAAACATTTGGATATCGTGCTTGCAAAAACTCAAACTCTGTGGCCTTCCCCTGTGGGAATGGGAGACAATGATTTTGGTTATACTTTGTGGGCGTTTGCTCTCAGGTTGGGTAATCAAGCTAATCGTCTTCTTCGTGGAACGCAATTTCATACTGCGAAAACGAGTGCTGTATTTTGTGTACGGTTTGAAACACTCAGTGAAAAACTGTGTCTGGTTGGGTCTTGTTCTGCTGGTGTGGCATTTTCTTTTGGTCAACGCGGTGAAGAAAAAGGTCAACGACAGGATTTTGTCGTGTGTGACAAAGGTTGTGGTGTGTCTGTTCATCGGCACTCTTTTGTGGCTCCTTAAAACGATCCTCGTGAAGGTCTTCGCCTTGCACTTCCACGTGAAAACGTTCTTCGAACGGATTCGGGAGGCTCTGTTCAGCCAATACGTGATCGAAACGCTGTCGTGTGATCGGTTGAGGGAAGAGGAAGAAGGTGAAGATAGATCCGTTGGGAGGGTGTTGTGTAATAAGAAGAAGAAGCAAGATGAGGAAATGTCGATCGAGCAGTTACATAGGTTGAATAAGAGAAATATATCAGCGTGGAATATGAAGAGAATGATCAACATCGTCATGCATGGGTCGTTTACTACATTGGACGAACGTATTTTGTGTTCAGATGTTGAGGATGAGCCTTTGCTGCAACTTCGAAGCGAAAACCAAGCAAAGATCGCAGCTCAGAAAATTTTTCATAACGTTGCGCAACCAGGATCCCAATGCATTTTCTTGCAAGATGTGATGCAGTTCATGCGAAGAGACGAGGCTTTGAAGTCAATGGATCTGTTGGGAGCAGCGTGTGCAGAACATGGGATTAGCATGTCTTCTCTTACAGAGTGGATGGTGAATGCTTTCAGGGAGAGAAGGGCACTGGCACTATCACTGAAAGACACGAAAACTGCTGTGGATGATCTTCATAACATGTTGAACATGATTGTCGGCATTGTCATTTTGATTGTCTGGCTTGCCATACTAGGAACTCCAATCCTACACTTCCTTGTCTTCATGGGATCCCAGCTTCTGTTGGCAGTGTTTGTGTTCGGGAATTCTTGCAGAACTGTTTTTGAAGCAATCATCTTCTTATTCGTGATGCACCCATTTGATGTTGGCGATCGATGTGAAGTAGATGGAATCCAGATGGTAGTGGAAGAGATGAATATACTGACAACAGTGTTTCTGAAGTGCGATAACCAGAAGGTTACATACCCAAACAGTGTTCTGGCTACCAAACCGATTAGTAATTATCAACGTAGTCCAGACATGGGAGATGCAGTGGATTTCTGCATTCATGTCTCCACCCCATTAGATAAAGTTGCAACTATGAAAAGAAGAATTATAGAGTATATTGAAAGGAAGAATGAACACTGGCATGCTGCACCGATGGTGATAATGAAGGATGTGGAAGAGTTGAACAAAGTGAACATGTCAGTGTGGCTTACACACAAAATGAATTATCAGGACATGAAAGAAAGATGGAACAGGAGAGCGGAGTTGATTGAAGAGATGATCAAAGTGTTGAAGGAACTTGATATTGAATACAGGCTTCTCCCCTTTGATGTCAATCTTACAAAACAACCTTCTCTGCTCTCTAACAAGCTTCCATCCAATTGGAAAACTTGTGACACCTCTCTCTCTTAG 2154 0.429 MTQREEVVLDFEDNNGRSNSKDENLASKGVVVNGQSDKLHQDLQEKRRGSESIRKRKQDQQKNEEIHLQTSHSQESVVRSSSNNSTPRYSWKSSISRTKSRLIDPPEESCANSESSEQKAAENDDSVEDMPEIYKKMRFSAFSLLQWLCLALIIVALLSNIWISCLQKLKLCGLPLWEWETMILVILCGRLLSGWVIKLIVFFVERNFILRKRVLYFVYGLKHSVKNCVWLGLVLLVWHFLLVNAVKKKVNDRILSCVTKVVVCLFIGTLLWLLKTILVKVFALHFHVKTFFERIREALFSQYVIETLSCDRLREEEEGEDRSVGRVLCNKKKKQDEEMSIEQLHRLNKRNISAWNMKRMINIVMHGSFTTLDERILCSDVEDEPLLQLRSENQAKIAAQKIFHNVAQPGSQCIFLQDVMQFMRRDEALKSMDLLGAACAEHGISMSSLTEWMVNAFRERRALALSLKDTKTAVDDLHNMLNMIVGIVILIVWLAILGTPILHFLVFMGSQLLLAVFVFGNSCRTVFEAIIFLFVMHPFDVGDRCEVDGIQMVVEEMNILTTVFLKCDNQKVTYPNSVLATKPISNYQRSPDMGDAVDFCIHVSTPLDKVATMKRRIIEYIERKNEHWHAAPMVIMKDVEELNKVNMSVWLTHKMNYQDMKERWNRRAELIEEMIKVLKELDIEYRLLPFDVNLTKQPSLLSNKLPSNWKTCDTSLS* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1692 717 MobiDBLite consensus disorder prediction 1 19 - -
Vra5g1692 717 MobiDBLite consensus disorder prediction 1 126 - -
Vra5g1692 717 MobiDBLite consensus disorder prediction 39 69 - -
Vra5g1692 717 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 30 708 - -
Vra5g1692 717 Coils Coil 661 681 - -
Vra5g1692 717 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 30 708 IPR016688 -
Vra5g1692 717 Pfam Mechanosensitive ion channel 479 684 IPR006685 GO:0016020|GO:0055085
Vra5g1692 717 Gene3D - 538 587 IPR023408 -
Vra5g1692 717 PIRSF Memb_At2g17000 3 716 IPR016688 -
Vra5g1692 717 SUPERFAMILY Sm-like ribonucleoproteins 528 587 IPR010920 -
Vra5g1692 717 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1692 Vra-Chr5 23228378 23231089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1692 50 709 Mechanosensitive Ion Channel Family AT1G78610 48.418 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1692 K22048 - qsu:112009310 808.135