Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1689 ATGCCTCAAAAACACAACACCGTGGTCTACCTCCATGGGACCCTCGATCTGGTAATCGTCGAGGCTCGCTGCCTTCCCAACATGGATTTGCTCTCCGAGCGTGTCCGAAGGTTCTTCTCCGCCCTCAACACTTGCAGCTCCTCCATATCCGGAAAAAGGAAGCTCCACCGCCCCCGCCCCCGCCACCACAAGATCATCACCAGCGATCCTTACGTCACCGTGTGCCTCGCCGGCGCCACCGTCGCGCGCACCCGCGTGATCTCTAATTCGCAGAGCCCTTCTTGGGACGAGCACTTCAAGATCCCGCTCGCGCACCCGGCCGCGCAGGTCGACTTCTTCGTCAAGGACAACGACATGTTCGGCGCCGACCTCATCGGAGTCGTCACCGTCTCCGCCGAGAGGATCCTCTCCGGCGAACCCATCAGCGACTGGTTCCCGATCATCGGCTCGTTCGGGAAGCAGCCGAAGCCTGACTGCGCGCTGCGCCTAGCGATGAAATTCACGAGGTGCGAGAACACTCGCCTGTTCCGGTCCGTCAAGGAACCGGATCCGGATCGGTTCGTGGTTCGGGACTCGTATTTCCCGGTCCGTCACGGAGGGGCGGTGACGCTGTATCAGGACGCCCACGTGCCAGAGGCAATGTTGCCGGAGGTTGAGTTAGAGGAGGGTGTGATGTTTGAGCATGGGAAGTGCTGGGAAGATATATGCCACGCTATTTTGGAAGCGCACCATTTGGTTTACGTTGTGGGTTGGTCCATCTACCACAAGGTTAGGCTCGTGAGAGAGCCTACCAAACCCTTACCGAGCGGTGGTAGTTTGAATTTGGGGGAGTTGCTCAAGTACAAGTCCCAAGAAGGTTTGCGAGTTTTACTTTTGGTTTGGGATGATAAGACTTCGCACAGCAAGTTTTTCATTAACACGACTGGAGTAATGCAAACGCATGATGAAGAAACTCGAAAGTTTTTCAAACATTCTTCAGTTAGATGTTTGCTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAGGCAGCAGGTTGTTGGAACGCTCTTTACGCATCATCAGAAATGTGTGATTGTGGATACTCAAGCACATGGCAATAATAGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCTGAGCACAGACTTTTCCGCGATAAGGACACTGTTTTTCAGGACGATTATCATAATCCCAGTTTTTGCGCGGGAACCAAAGGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGTTGGAGAAAGGCCACGAGATGGTCCGAGTTGGGTCGAAAGCTCAAAAGAGTGTCTCACTGGAACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAATTCTAACTGATGATCCTGAACTCTGGGTTTCGAAGGAAGACGATCCTAAAAATTGGCATGTTCAGGTTTTCCGATCCATAGATTCTGGCTCTTTGAAAGGATTTCCTAAGGATGTATTTGAAGCTGAGTCCCAGAACCTTGTGTGTGCGAAAAATCTGGTTATAGACAAGAGTATTCAAACAGCGTATATACATGCTATCAGATCTGCTCAACATTTTATTTATATCGAGAATCAATATTTTGTCGGATCATCCTTTGCTTGGCCAGCTTACAAAGATGCAGGCGCTGATAACCTAATTCCGATGGAGTTGGCACTGAAGATAGTTAGTAAGATACGATCCAAGGAGAGATTTACAGTGTATATAGTCATCCCAATGTGGCCCGAAGGTAACCCTACTTCTGCTTCTGTGCAAGAGATACTCTTTTGGCAGGCACAAACTATGCAAATGATGTATAATGTCATAGCTCGGGAATTAATAGTTATGGAACTTGACCATCATCCACAAGATTATCTCAACTTTTATTGTCTTGGAAACCGAGAGCCGTTGAAAAATTATATTTTAAGTCCAAGTAGTTCGTCTCCAGATAATGGCGATACGATTTCAGCCTCACAAAAGTTCCGAAGGTTCATGATTTATGTACATGCCAAGGGAATGATTGTGGATGACGAATATGTAATTCTTGGGTCTGCCAATATCAATCAACGATCCATGGCTGGATCAAGAGACACTGAGATAGCAATGGGTGCGTATCAACCCCGTCATACTTGGGGTAAGAAAAAGGGGCATCCACATGGTCAGGTATATGGGTATAGGATGTCTTTATGGGCAGAACACATAGGGAGCATACAAGCTTGCTTTAAGAATCCTGAAAGTCTTGAATGCGTGAGAAGTGTGAACAGTATTGCTGAAGAAAACTGGAGGAGGTACACATCTGACGATTATAGTCCATTGCAAGGGCACCTGATAAAATATCCTGTGATTATAAATGCCTCTGGGAAGATAAAGTCCATACCTGGATTTGAGTCTTTCCCAGATGTTGGAGGCAAGGTGCTTGGCTCCAGATCCAACCTTCCTGATGCTCTAACCACATAG 2544 0.4744 MPQKHNTVVYLHGTLDLVIVEARCLPNMDLLSERVRRFFSALNTCSSSISGKRKLHRPRPRHHKIITSDPYVTVCLAGATVARTRVISNSQSPSWDEHFKIPLAHPAAQVDFFVKDNDMFGADLIGVVTVSAERILSGEPISDWFPIIGSFGKQPKPDCALRLAMKFTRCENTRLFRSVKEPDPDRFVVRDSYFPVRHGGAVTLYQDAHVPEAMLPEVELEEGVMFEHGKCWEDICHAILEAHHLVYVVGWSIYHKVRLVREPTKPLPSGGSLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVRCLLSPRYASSKLSIFRQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRLFRDKDTVFQDDYHNPSFCAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATRWSELGRKLKRVSHWNDDSLIKLERISWILSPSESILTDDPELWVSKEDDPKNWHVQVFRSIDSGSLKGFPKDVFEAESQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFVGSSFAWPAYKDAGADNLIPMELALKIVSKIRSKERFTVYIVIPMWPEGNPTSASVQEILFWQAQTMQMMYNVIARELIVMELDHHPQDYLNFYCLGNREPLKNYILSPSSSSPDNGDTISASQKFRRFMIYVHAKGMIVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPRHTWGKKKGHPHGQVYGYRMSLWAEHIGSIQACFKNPESLECVRSVNSIAEENWRRYTSDDYSPLQGHLIKYPVIINASGKIKSIPGFESFPDVGGKVLGSRSNLPDALTT* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1689 847 CDD C2_plant_PLD 8 168 - -
Vra5g1689 847 Gene3D C2 domain 11 179 IPR035892 -
Vra5g1689 847 PIRSF PLD_plant 1 847 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vra5g1689 847 SMART C2_3c 14 144 IPR000008 -
Vra5g1689 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824
Vra5g1689 847 SUPERFAMILY Phospholipase D/nuclease 179 455 - -
Vra5g1689 847 SMART pld_4 693 720 IPR001736 GO:0003824
Vra5g1689 847 SMART pld_4 350 385 IPR001736 GO:0003824
Vra5g1689 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824
Vra5g1689 847 Gene3D Endonuclease Chain A 224 469 - -
Vra5g1689 847 Pfam Phospholipase D Active site motif 694 720 IPR001736 GO:0003824
Vra5g1689 847 Pfam Phospholipase D Active site motif 351 385 IPR001736 GO:0003824
Vra5g1689 847 Gene3D Endonuclease Chain A 519 739 - -
Vra5g1689 847 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 152 IPR035892 -
Vra5g1689 847 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Vra5g1689 847 Pfam Phospholipase D C terminal 768 837 IPR024632 -
Vra5g1689 847 PANTHER PHOSPHOLIPASE D 6 846 IPR015679 -
Vra5g1689 847 SUPERFAMILY Phospholipase D/nuclease 542 778 - -
Vra5g1689 847 Pfam C2 domain 13 147 IPR000008 -
Vra5g1689 847 PANTHER PHOSPHOLIPASE D 6 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1689 Vra-Chr5 23206925 23214730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1689 8 676 Phospholipase D Gene Family (Wang group) AT4G35790 65.401 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1689 K01115 - gmx:100795859 1552.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1689 5 23206925 23214730 Vra5g1689 5 23206925 23214730 ECH