Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1681 ATGATTGATTCGGTTCTTCTCGCGCTTTTCCTGCCCTGCCTCGGTATGAGTGCGGTTTTCATCGTTTACATGTGCCTTCTATGGTACGCCACCACCCGCCACCACCCCTCTGGCAACGGCTTACCGGTGAAGCAGGTCACTGACAAGGGTCTCTCTTCCCTAGAGTTAGAGAAGCTTCCCAAAATTACCGGCAAAGAACTGGTCTTAGGCACTGAATGCGCCGTCTGCCTCGACGAAATCGAAGGCGAGCAACCGGCCAGACTGGTTCCTGGTTGCAACCATGGCTTCCATGTCCATTGCGCTGATACCTGGCTCTCCAACCACCCACTTTGTCCTGTATGTAGGACGAAACTCGATCCTCAAATTTTCAGTTCCAATATTCCCTGA 387 0.5245 MIDSVLLALFLPCLGMSAVFIVYMCLLWYATTRHHPSGNGLPVKQVTDKGLSSLELEKLPKITGKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVHCADTWLSNHPLCPVCRTKLDPQIFSSNIP* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1681 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 121 IPR013083 -
Vra5g1681 128 SMART ring_2 73 114 IPR001841 -
Vra5g1681 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 125 - -
Vra5g1681 128 Pfam Ring finger domain 72 115 IPR001841 -
Vra5g1681 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 125 - -
Vra5g1681 128 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Vra5g1681 128 SUPERFAMILY RING/U-box 72 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1681 Vra-Chr5 23140353 23141254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1681 1 126 C3H Transcription Factor Family AT5G42200 58.462 6.67e-48 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1681 K19037 - gmx:100776003 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1681 5 23140353 23141254 Vra5g1681 5 23140353 23141254 ECH
Vra6g2007 6 36712208 36713446 Vra5g1681 5 23140353 23141254 PCT