Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1678 ATGGCCTCTGTCATGTTTGTTTTCGTAAGCTACCTCATATTTTGTTGTTTCTCAGTTCACAGTTTTGCCTTCTCACCTTCTGGATGGACCAATGCACATGCCACCTTTTATGGCGGTAGTGATGCCTCTGGGACAATGGGAGGAGCTTGTGGATATGGGAATCTATATTCAACAGGGTATGGAACTGATACAGCAGCACTGAGTACTGCATTATTTAACGATGGAGCTTCGTGTGGGGAGTGTTACAGAATCATGTGCGATTATCAAGCAGATCCGAAATGGTGCTTGAAAGGAACATCTGTAACCATAACTGCCACAAACTTCTGCCCTCCCAATTTCGCTCTGCCAAGCAACAACGGTGGCTGGTGCAACCCTCCTCTCAAACACTTTGACATGGCTCAACCCGCATGGGAAAAGATTGGTATCTATAGAGGAGGGATCGTGCCCGTTTTGTTTCAAAGGGTTTCATGCATGAAGAAAGGAGGGGTTAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTGCTGATCAACAACGTAGGAGGAGCTGGATCTATTCGATCTGTGTCCATCAAAGGCTCAAAAACTGGGTGGATGACTATGTCAAGAAATTGGGGTGCTAATTGGCAATCCAATGCCTATTTGAATGGTCAATCTCTGTCTTTCAGAGTCACAACAACCGATGGTATCACCAAACTTTTTCAAGATGTTGTTCCATCCAATTGGCTTTTGGCCAGAGTTTCTCTACCACTGTTCAGTTTTAAGGCCACAAGGGCTATTGAGTTGTGGGTTTTGGAGTTTCCGATGAACGAAACGGCAGAGGCGTGCCTGTTATTTTGCCGGAGCAGCCCGCCACCCTTCTCTTCTGCTTTTGAATTTGGTAAATATGGTACGATCGAACCCATCAACTTGATGCCTATAATGAAGAACCCTAAATAG 942 0.4533 MASVMFVFVSYLIFCCFSVHSFAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTALFNDGASCGECYRIMCDYQADPKWCLKGTSVTITATNFCPPNFALPSNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVSCMKKGGVRFSVNGRDYFELVLINNVGGAGSIRSVSIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGITKLFQDVVPSNWLLARVSLPLFSFKATRAIELWVLEFPMNETAEACLLFCRSSPPPFSSAFEFGKYGTIEPINLMPIMKNPK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1678 313 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vra5g1678 313 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Vra5g1678 313 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Vra5g1678 313 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Vra5g1678 313 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Vra5g1678 313 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vra5g1678 313 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vra5g1678 313 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Vra5g1678 313 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Vra5g1678 313 SUPERFAMILY PHL pollen allergen 159 245 IPR036749 -
Vra5g1678 313 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Vra5g1678 313 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vra5g1678 313 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vra5g1678 313 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vra5g1678 313 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vra5g1678 313 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Vra5g1678 313 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Vra5g1678 313 SMART dpbb_1 64 152 IPR007112 -
Vra5g1678 313 PANTHER EXPANSIN 12 247 - -
Vra5g1678 313 Pfam Lytic transglycolase 64 151 IPR009009 -
Vra5g1678 313 Gene3D - 16 158 IPR036908 -
Vra5g1678 313 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 243 IPR007117 -
Vra5g1678 313 SUPERFAMILY Barwin-like endoglucanases 28 180 IPR036908 -
Vra5g1678 313 PANTHER EXPANSIN-A15 12 247 IPR002963 GO:0009664
Vra5g1678 313 Gene3D - 162 248 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1678 Vra-Chr5 23119753 23121385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1678 64 248 Expansin Gene Family AT1G20190 82.703 1.40e-116 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1678 - - gmx:100527629 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1678 5 23119753 23121385 Vra5g1678 5 23119753 23121385 ECH
Vra6g2010 6 36727555 36729228 Vra5g1678 5 23119753 23121385 PCT