Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1675 ATGGCCTCACCGCCATCCAAACCTCCACACATTTTATTTTCTGTGAGAGAGAAAGCGATGGCATCATCATCTCCATGTGACTATTGGCCCCATCTTTCTCACTCTCTCTCTTCTCCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCCTCACTCTCTCAAACCCTCCTTCCTCCTCCTCCTCCTCCTTCCGTTGAACATGTCTGGAACGACCTCAAACTCTCCTCCCTCTCCAACTCTCCCGTTGACTTCAACCACTCTTCTTCTCATTCTTCTCTCCTCTCTCTCTCTCCCTCTCACAACCACCACTCTCTTCTCTCTCTCTCCAACGCTTCCTTCCATTCCAACCACACCGCACGCCACAGAGATCAACACCATAATCGCATCATGAAGAATCGAGAATCCGCGGTTCGCTCCAGAGCAAGAAAACAGGCTCATAGAAAAGGTTTGGAAGATGAAATTGCTCGGTTGACGGAAGAGAATTCGAGACTGAGAAAAGAATTGAAAGAGATGAACGTAATTCTCTGA 525 0.4781 MASPPSKPPHILFSVREKAMASSSPCDYWPHLSHSLSSPSSSSPSPSPSSLSQTLLPPPPPPSVEHVWNDLKLSSLSNSPVDFNHSSSHSSLLSLSPSHNHHSLLSLSNASFHSNHTARHRDQHHNRIMKNRESAVRSRARKQAHRKGLEDEIARLTEENSRLRKELKEMNVIL* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1675 174 CDD bZIP_plant_BZIP46 125 170 - -
Vra5g1675 174 MobiDBLite consensus disorder prediction 79 99 - -
Vra5g1675 174 SUPERFAMILY Leucine zipper domain 126 170 IPR046347 GO:0003700|GO:0006355
Vra5g1675 174 MobiDBLite consensus disorder prediction 115 148 - -
Vra5g1675 174 MobiDBLite consensus disorder prediction 33 50 - -
Vra5g1675 174 MobiDBLite consensus disorder prediction 127 148 - -
Vra5g1675 174 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 127 141 IPR004827 GO:0003700|GO:0006355
Vra5g1675 174 Pfam bZIP transcription factor 123 170 IPR004827 GO:0003700|GO:0006355
Vra5g1675 174 MobiDBLite consensus disorder prediction 33 63 - -
Vra5g1675 174 PANTHER PROTEIN FD 75 168 - -
Vra5g1675 174 Gene3D - 122 174 - -
Vra5g1675 174 Coils Coil 139 173 - -
Vra5g1675 174 SMART brlzneu 117 173 IPR004827 GO:0003700|GO:0006355
Vra5g1675 174 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 75 168 IPR043452 GO:0003700|GO:0045893
Vra5g1675 174 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 121 171 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1675 Vra-Chr5 23101214 23107042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1675 122 174 bZIP Transcription Factor Family AT3G56850 56.604 7.02e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra5g1675 bZIP_1 1.6e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1675 K14432 - vra:106761574 234.958