Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1660 ATGACTCTTGAAGATTTCTTTACCTTGACCGAGATGAAAGATGGGCTCACAGCACCTTCTCGGGTGCAGGAGCTGGTCTCTGTGATGCAGAAAGAAAAAAGTTGCGATGTTAAAAATTCTGCTGATGCGACTAGGCAGTGGGCTGCTGTTGCAAGCACTATTACCGCTACAGAGAATAAAGATTGCCTTGATCTTTTTATTCAATTGGATGGACTTTGTTTCATCAACGGATGGTTAAAGGATGCCCAAAATTTTGAGGTTGATGCAAAAGACAGTTTTGTTGAAGAATCAATTACTGCAATGTTACGTGCAGTTGAAAAGCTTCATCTAGACTGTGAGATGTCAATTTCATCTGGAATTCGCATCACTGTAAGTAATCTTCTTGGCCATCATAGCGCTAAGGTTCAGGATAGAGCAAGAACATTGTTTGACAGCTGGAAGAGAGCTGAAAATGTTGATACTGAATCTCATGATGTGGAGCTTGCTAAGGTTGACTGTGCAACCAATGAGATTGTCAAGGAGGAAAGCCAGCCATCTGCTGTGGATGAAGCTGGCAATGATAATGATAATGCATCAGGACTAAATGGAACTGTAAATTGTCTATCGAAAAGCTCAGATAATTTGCTTGTACATAGTTCTGATAATGTGTGTCACTCATCCTCCAGTTTGGAATGTGATGGTATCAAAGAGGGATCAGTAAACCATGGTGCTGGTGTTCCATCTTCTGCTCAAGTAGCACTGCCTTTATGCCCTGCAGATGTGATCACTTCGGTTGAAGGACAGTCAGATATGGTTCAGTTAATTGAGTTGGCTAAACTGGAAAAGCAGGAGCAAAACGTTAATGTCCCTCCAGAAAAACTTGGAGCACCGGAGATCTGTTCTGTGTCCTCTGAGCCAGAGCCCGAGTCTGTTTCCGTTGTTTCCTGTGAAGCAAAAGCACCAGAATCTGTTAAAGAACCAGCTTTGGAGCAAAATGTTGAACACAATGAGGATGATGTTTGTCATAACTTGCCTATTTCTACTAGTATGAAGACGCCTGCATCTGATAGGAAGAGTGGGGAAGATGATGTTAGAACTGTAACTAGCTTTTCACAAGTTTCCAGAGCTGCAGAGAATGACAATGACTGCTCTAGTGCATTACAAGATACATCAGTCAGTGACAGTAAATTGGGAAAGACTGAGGTGTCAGATATGTCTGTCTGTGGAGCGGGATATGTCACACCATCAAAGGAAGGCAAGGGTCATGTTGATAACAACAAAGAATTGACATCTATTGGTTCTGATTTTTGTAAACCTGAAATAGATTTCAGAAGGTCTAACATAGTTGACAAGAGAGGTTCTGGCAACGAACTTGACTGTGGCATTGTCGATCCTTTAGAATTTGCTCGACAAGTTGCTCAGGAAGTTAATAGAGAAGTCAGCAGTTCTTCCGAAAAATTCTCATATGGCAGAATCAGGCAACCAGGCAGTCCAGATTCTGTAAGAAAAGAGGATGAGCTCACTCCTGTCCCACCTGAGGAGGTTTCCTCCAGACACAGCTTTGCTACTGAGGAATGTTCAATGGAGGGGCGTGCAAGTATTCTTGACAATACTAAGGCGGAGCCTGAATGCAGACCTGATGTGGTGTGCTTGGAGGTGACTGAAGCAGCTCAAGATTCAGGAGGTAATTCAGAGAAACAACCTTGGGGCTTTGATCTCAACGAAGTTGGTTCTGACGATATGGATGTTTGTGTAAATACTACATCGACCCCCATACCTGTTGTCTCTGCTTCAAGGCCCACGCCAACTCCTGGGTTGCCTGGTGTCCCTTTGCAGTTTGAGGGAACACTTGGTTGGAAAGGATCAGCTGCCACCAGTGCCTTTCGCCCTGCATCTCCTCGTAAATATTGTGATAATGAGAGGAATCTTTCGGATACGAACATTGACACTTCAAGGCCGAGGCAGGACTGGCTTGATTTTGATCTAAATGTTGCTGAGGGTGAAGAAGGAAATGCAAAACCTATTGCCGAATCTTCAGGCAGGCGTTCTGAGCAATCAACTGTTGAATTTAGTTCTAAAAGTTCAAGCATGCTTGGATTTGATTTGAACAGTACTGGTGATGATGGCCACGTCCAACCTTCAGATCACAGGATGGAGGGACAACTCTTTCTTGGAAGAAATGGCTATTTGAGCCCATCACCTACATCGTCATCATCATCAATGCAGCCTTATGTTAGAAACATTGATTTAAATGACAGGCCATGCCTTCAAACTGATTTGGTAGACCTGGGGTCCTGTAAGTCTTCTCATATAATCAATGGATATGATTGTTCTAAATCATCAGATGCTCCTGTTATCTCTCTTTTGGGCGCCAAGGTAGAAGTTGGTAAAAAAGAACGTGTTCCCCAATCCTTTTTGCCGAATGGAAATGCTGTTGAACCTGCAATAGATCTTACGATGTCAAGGACCGGTGGTACTATAGGGATGGCTCCCGCTGCCTCCTTCAATCAATCATCTGTTTTTGGGTATAATGGAGTGACATCAGCATCAGCAGCACCCACAATGCCTTTTTCATCAGCCATGTACGGGTCAGGTGGCACAGTTCCTTATATGGTTGACTCAAGAGGAGCTCCAGCTGTCCCACAAGTGGGTGGACCTTCATTAAATATACTTTCATCATCTTACTCTCAGCCACCACCGTTCTTTATGAACATGACGGGTACACAACTCGGTCTGAATGGATTTGGGCCTTCACGTCCTAATTTTGACCTGAACTCTGGGTTCATGATTGAGGGTGGGAATAGAGAGACATTTGCAGCCAGGCAGTTTTCCTTTCCTGGTCAGGGAAGGGCTGTGGAGGAGCAAGTAAGAACCATGCCGCAGCCGTCAAGTTCGGTGGTTGGTGGGAAACGAAAGGAACCAGATAGCAGTTGGGAACCCTACCCATATAGCTACAAACATTCGCAACCTCCATGGAAGTAG 2961 0.4428 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEKSCDVKNSADATRQWAAVASTITATENKDCLDLFIQLDGLCFINGWLKDAQNFEVDAKDSFVEESITAMLRAVEKLHLDCEMSISSGIRITVSNLLGHHSAKVQDRARTLFDSWKRAENVDTESHDVELAKVDCATNEIVKEESQPSAVDEAGNDNDNASGLNGTVNCLSKSSDNLLVHSSDNVCHSSSSLECDGIKEGSVNHGAGVPSSAQVALPLCPADVITSVEGQSDMVQLIELAKLEKQEQNVNVPPEKLGAPEICSVSSEPEPESVSVVSCEAKAPESVKEPALEQNVEHNEDDVCHNLPISTSMKTPASDRKSGEDDVRTVTSFSQVSRAAENDNDCSSALQDTSVSDSKLGKTEVSDMSVCGAGYVTPSKEGKGHVDNNKELTSIGSDFCKPEIDFRRSNIVDKRGSGNELDCGIVDPLEFARQVAQEVNREVSSSSEKFSYGRIRQPGSPDSVRKEDELTPVPPEEVSSRHSFATEECSMEGRASILDNTKAEPECRPDVVCLEVTEAAQDSGGNSEKQPWGFDLNEVGSDDMDVCVNTTSTPIPVVSASRPTPTPGLPGVPLQFEGTLGWKGSAATSAFRPASPRKYCDNERNLSDTNIDTSRPRQDWLDFDLNVAEGEEGNAKPIAESSGRRSEQSTVEFSSKSSSMLGFDLNSTGDDGHVQPSDHRMEGQLFLGRNGYLSPSPTSSSSSMQPYVRNIDLNDRPCLQTDLVDLGSCKSSHIINGYDCSKSSDAPVISLLGAKVEVGKKERVPQSFLPNGNAVEPAIDLTMSRTGGTIGMAPAASFNQSSVFGYNGVTSASAAPTMPFSSAMYGSGGTVPYMVDSRGAPAVPQVGGPSLNILSSSYSQPPPFFMNMTGTQLGLNGFGPSRPNFDLNSGFMIEGGNRETFAARQFSFPGQGRAVEEQVRTMPQPSSSVVGGKRKEPDSSWEPYPYSYKHSQPPWK* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1660 986 MobiDBLite consensus disorder prediction 661 688 - -
Vra5g1660 986 MobiDBLite consensus disorder prediction 671 688 - -
Vra5g1660 986 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 151 IPR035441 -
Vra5g1660 986 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 154 IPR035441 -
Vra5g1660 986 MobiDBLite consensus disorder prediction 474 516 - -
Vra5g1660 986 MobiDBLite consensus disorder prediction 490 505 - -
Vra5g1660 986 MobiDBLite consensus disorder prediction 336 359 - -
Vra5g1660 986 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Vra5g1660 986 MobiDBLite consensus disorder prediction 944 986 - -
Vra5g1660 986 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 986 - -
Vra5g1660 986 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 986 - -
Vra5g1660 986 Pfam TFIIS helical bundle-like domain 101 149 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1660 Vra-Chr5 22988904 22994323 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vra5g1660 Med26 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1660 - - gmx:102664074 1417.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1660 5 22988904 22994323 Vra5g1660 5 22988904 22994323 ECH