Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1647 ATGTCGACTTCCGGCCAGGATCATCATCAACCTCACGACCCTCCTCATCCATCTCAATTTAAATTTCACCTACTGCACTCCCCTTCTCACATTTCTCCCCTTTCCCATTCTATTTTTCCCAATTTCTTACCGAGTCAAAGATATGAAAGTAGTCACAGAAGTAATCTCGAAGTGGTTTCTGACACGAGTAAAACAGTTTATCTTCCCAGTCCAGTTCAAACCCAGTCTACTGAAAGAGGAAAGCAAAATGTTAAATCTAGAAACACAAAATCTGGGACTCACAGACCTAGTGCCGGTTCCCCTAATTCAACTGTGGGTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTGACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAGGGATGGCACCCTTGATCTTAACAAAACCGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAAAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAGAACCAAATTAACAGTCTAAAGGCTGAGGTTGAAAGTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAGGAAAGTGAAAGCTCTCAGAAGTACCTTTTTTTGACTAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCTGATGAGGAATCAGTTTTCCGGCAAAGGCAGTACAAAATGATTGTTAGAAGCGCCACTGGACCAATATATCTGTACCTCTTGAGCAAGGACGACTGCAAGTATGAAGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCATGGAACAGTGAGCAATGCAGAAAGAGAGGTGTGGGATTATTAGAAAGCCACGACGATAAACAAAATACTTCTGAAAGTTTCAATTTTCATGAATCACAGGCATCTGGAATTCAAGAAATAACTCCCACTGATTTTGAAATGGAAGATGACTACTGGTTTCAGTCAGATCCTGGAGTAAGGCTAACACAACTTTGGGAAAATGAACCAATTATTCCTATAGAGGAGCTTCAAGACTATTAA 1173 0.4041 MSTSGQDHHQPHDPPHPSQFKFHLLHSPSHISPLSHSIFPNFLPSQRYESSHRSNLEVVSDTSKTVYLPSPVQTQSTERGKQNVKSRNTKSGTHRPSAGSPNSTVGNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINSLKAEVESLYARECELDDCIRKKQELLRNLEESESSQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKRVKLMDPSWNSEQCRKRGVGLLESHDDKQNTSESFNFHESQASGIQEITPTDFEMEDDYWFQSDPGVRLTQLWENEPIIPIEELQDY* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1647 390 PANTHER TRANSCRIPTION FACTOR E2F 51 379 IPR015633 GO:0000978|GO:0006357
Vra5g1647 390 SUPERFAMILY E2F-DP heterodimerization region 187 293 IPR037241 -
Vra5g1647 390 SMART E2F_TDP_2 110 175 IPR003316 GO:0005667|GO:0006355
Vra5g1647 390 Gene3D - 182 293 - -
Vra5g1647 390 PANTHER TRANSCRIPTION FACTOR E2FC 51 379 - -
Vra5g1647 390 Pfam E2F transcription factor CC-MB domain 191 290 IPR032198 GO:0046983
Vra5g1647 390 MobiDBLite consensus disorder prediction 1 23 - -
Vra5g1647 390 CDD E2F_DD 186 293 IPR032198 GO:0046983
Vra5g1647 390 MobiDBLite consensus disorder prediction 54 107 - -
Vra5g1647 390 Gene3D - 105 177 IPR036388 -
Vra5g1647 390 Pfam E2F/DP family winged-helix DNA-binding domain 112 175 IPR003316 GO:0005667|GO:0006355
Vra5g1647 390 Coils Coil 205 225 - -
Vra5g1647 390 SUPERFAMILY "Winged helix" DNA-binding domain 110 173 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1647 Vra-Chr5 22894581 22898643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1647 2 378 E2F-DP Transcription Factor Family AT1G47870 43.810 1.57e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vra5g1647 E2F_CC-MB 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1647 K06620 - gmx:100797301 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1647 5 22894581 22898643 Vra5g1647 5 22894581 22898643 ECH