Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1643 ATGGCTTTGAGAAAATCAACTAAACTCCCTCAAGCAGCACTCATCAAGCAAATCCTCAAGAGGTGTTCGAGCTTAGGGAGGAAAGACGATGAAGCTCTGCGCTTGGACGTTCCCAAGGGTCACTTTGTTGTCTACGTCGGAGAAAACAGAAGCAGATATATAATCCCAATCTCCTTCCTAAGTCGCCCTGAGTTCCAAACACTTCTACACCAGGCTGAAGAAGAGTTTGGCTTCGATCACGAAAAGGGTCTCACCATTCCATGCCAACAAGACGTTTTCGAGTCTCTCACCTCCATGCTCCGATGA 306 0.4739 MALRKSTKLPQAALIKQILKRCSSLGRKDDEALRLDVPKGHFVVYVGENRSRYIIPISFLSRPEFQTLLHQAEEEFGFDHEKGLTIPCQQDVFESLTSMLR* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1643 101 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 101 IPR003676 GO:0009733
Vra5g1643 101 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 101 - -
Vra5g1643 101 Pfam Auxin responsive protein 24 100 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1643 Vra-Chr5 22851408 22852047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1643 1 96 Calmodulin-binding Proteins AT3G43120 42.308 1.38e-19 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1643 K14488 - gmx:100778552 188.348