Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1641 ATGGCAATAATGTCAGAAGGGGGACTTGCAAAATGTACCAGAATCCGGCACATCGTCAGGCTCCGCCAAATGCTGCGGCGCTGGCGTAGCAAGGCTCGCATGTCGGCCCACCGAGAAGTACCCTCCGATGTTCCGGCGGGACACGTGGCGGTGTGCGTGGGCACCAACTCCAGGAGATTTGTGGTGCGCGCCACCTACCTGAACCACCCCGTGTTCACGAAGCTACTTGTAGAGGCGGAGGAAGAGTACGGATTCTCCAACAACGGTCCTCTCACCATTCCCTGCGACGAAACACTCTTCGAACAGCTCCTCCGCTTCATTTCACGCTCTCATTCCCCTCCCTCCAACCGCTTCGACGACTGTCACGTTCCTCTCATAAACAACCTCGACTTCTGCCTCCAATCTCGACCACTACTCCACTGA 423 0.5697 MAIMSEGGLAKCTRIRHIVRLRQMLRRWRSKARMSAHREVPSDVPAGHVAVCVGTNSRRFVVRATYLNHPVFTKLLVEAEEEYGFSNNGPLTIPCDETLFEQLLRFISRSHSPPSNRFDDCHVPLINNLDFCLQSRPLLH* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1641 140 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 11 138 IPR003676 GO:0009733
Vra5g1641 140 PANTHER SMALL AUXIN-UP RNA-RELATED 11 138 - -
Vra5g1641 140 Pfam Auxin responsive protein 20 106 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1641 Vra-Chr5 22827886 22829015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1641 9 139 Calmodulin-binding Proteins AT4G34750 49.306 1.54e-42 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1641 K14488 - gmx:100794795 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1641 5 22827886 22829015 Vra5g1641 5 22827886 22829015 ECH
Vra6g2048 6 37057246 37058255 Vra5g1641 5 22827886 22829015 PCT