Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1638 ATGCGCCGATTGCAAAAATCAAAAAGAGTTTCATGGGCCTCCGATTTAGATCTTTGTCAGGTTAGGCTATTCTTATCAGAAGAATCCCCTTCGCAGGTTGGATTAAATTCTCAAGATCACCTCCAAGCTAAGGCATCATTGCAGCTGTCTGCAGGTGGACCAGGCTCCGATGACATTCTGCCTCCTGGATTTGAGGGAACTCATACTTCAAGTCAGTTTGAGATTAAGCCATCTCAAATACCAGTTATCAAGTGGATTACTCCTCCAAAGATCGTGCTAAATCTCACATGGCAAGTAGTGTGTGGGGAAGAAAGCAAAGAGGTAGAGGATCAACGTCAGAGGGAGATGAGAGTACTTGAAGCTATTTATCCTCGCGCATCATCCATTCCTCCAAACCCTTCTGTTTCAGTGGATGTTGAAGATTCAAATTACATGGATGTTCAACCTGCACTGATACCAATAACGGCAGTTGAAGATGACGATGCAGCAGCAGATACATTATCAGATTCCCTGGAACCAGTTGATACTTCACAATGTCTTGAATTACCTCCCGGTATGTTGAAGAATTCAAACTCTGCCACAAGTACGCAATTTTCTCGTGGTCTGACATCTGATGTATCTGCTGCATCTGTTGCTTTAACTAACATTGTGAGGAGCAACGAACATGGGAAATTGATTGACCATGAATTACTTAATAATATTCTCAGCAATCCAGAAGTGATTGAGAAATTGGTTAGAGATTATGGAGCTACTAATAACTCTCAATATGTACATAATGTGGGGTCGTCCTGTGCGGTTTTTTCAAATCCTCCTATTCCTGTTAATCAAGGAGAAACCGCCACACCTTCAGCGATTGCTTTTTCAGCCACTTCTTCCTATACACCATCTACCGGAGGTCAGGTGGCACCTGTTTCTACCCAATGGCATCCTAGGCCTGCAAACAGTTCAGCTATTGTTTCTTCTCCTGTTGAGGTTCCTGCTGCGAAAGATGTTAACTACTATAAGAGTTTAATTCAGCAACATGGAGGAGATAAACAAGAAACACTACCATATTCCAGTAAACGTCAGATTCATCAGCCAGTAACAAGTTATGAGCCAACATACAATCAAAGAGCTAAAGTGTCAAAACCAAAGATAATGAAGCCTTGTATCTTTTTCAACAGTTCTAGAGGATGTCGGAATGGAGCCAACTGTGCCTACCAGCATGACGCGTCATTTCAGCCACGAGGTAATACCGTGGCGGGGATACAAAGTTCAAAGAGGATGAAAATGGATCATGAGATTAGCAGTTAA 1293 0.4238 MRRLQKSKRVSWASDLDLCQVRLFLSEESPSQVGLNSQDHLQAKASLQLSAGGPGSDDILPPGFEGTHTSSQFEIKPSQIPVIKWITPPKIVLNLTWQVVCGEESKEVEDQRQREMRVLEAIYPRASSIPPNPSVSVDVEDSNYMDVQPALIPITAVEDDDAAADTLSDSLEPVDTSQCLELPPGMLKNSNSATSTQFSRGLTSDVSAASVALTNIVRSNEHGKLIDHELLNNILSNPEVIEKLVRDYGATNNSQYVHNVGSSCAVFSNPPIPVNQGETATPSAIAFSATSSYTPSTGGQVAPVSTQWHPRPANSSAIVSSPVEVPAAKDVNYYKSLIQQHGGDKQETLPYSSKRQIHQPVTSYEPTYNQRAKVSKPKIMKPCIFFNSSRGCRNGANCAYQHDASFQPRGNTVAGIQSSKRMKMDHEISS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1638 430 ProSiteProfiles Zinc finger C3H1-type profile. 377 405 IPR000571 GO:0046872
Vra5g1638 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 1 425 - -
Vra5g1638 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1638 Vra-Chr5 22808861 22814388 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra5g1638 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1638 - - gmx:100783321 658.677