Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1635 ATGGATGATGCTGGGCATCGTGAAAATGGTAGGCACAAAGCAGATCAATATAAATCTGCTCAAGGACAGTGGCTGATGCAACATCAGCCTTCCATGAAGCAGATCATGGCAATTATGGCCGAAAGAGATGCAGCCATCCAAGAAAGAAATCTGGCCATTTCTGAGAAGAAGGCAGCATATGCTGAGCGTGACATGGCATTTCTGCAGCGGGATGCTGCAATTGCAGAACGAAATAATGCAATTTTGGAACGAGATAATGCAATTGCAACTCTTCAGTATCGAGAAACCTCGATAGGTAGTGGCAGTATGCCATCGTGTCCTCCGGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATCCTTCTTACAGCACACGGGAAATGCACACAACCGATGCCCTCCCTACAGCTCCCATCACTTCTGAGGCTGGGAAATCAAGGCGGGCCAAGCGGCCCAAGGAACCAAAGTCAACTTCACCTAATAAGAAGACTCCAAAAGCAGCAAAAAAAGTCAAAAAGGAGAGTGAAGACTTGAATAAGGTTATGTTTGGCAAGGCACATGAGTGGAAAAATGGTCAAGAAATGGTCAACGGAGGCGATGATCTTAACAAGCAGTTAGTAGTGTCTAAGGCTGATTGGAAAGGTCAGGACTTGGGATTGAACCAAGTGGCTTATGATGAGTCAACCATGCCAGCGCCTGTATGTTCTTGTACCGGTGTCCTGAAGCAGTGTTACAAATGGGGCAATGGAGGTTGGCAGTCTGCCTGTTGCACAACCACTCTGTCAATGTATCCACTTCCTGCAGTGCCAAACAAGAGGCATGCTCGTGTTGGAGGTCGGAAGATGAGTGGTAGCGCTTTCAACAAGCTGCTTAGTCGCCTTGCCGCAGAAGGTCATGATCTGTCAAACCCTGTTGACCTCAAAGACCATTGGGCCAAACACGGGACGAACCGATACATTACAATAAAATAG 1014 0.4724 MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRETSIGSGSMPSCPPGCQISRGVKHIHHPQQQVHHIPNMGDPSYSTREMHTTDALPTAPITSEAGKSRRAKRPKEPKSTSPNKKTPKAAKKVKKESEDLNKVMFGKAHEWKNGQEMVNGGDDLNKQLVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1635 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
Vra5g1635 337 MobiDBLite consensus disorder prediction 158 174 - -
Vra5g1635 337 SMART GAGA_bind_2 1 337 IPR010409 -
Vra5g1635 337 Coils Coil 58 85 - -
Vra5g1635 337 MobiDBLite consensus disorder prediction 1 15 - -
Vra5g1635 337 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g1635 337 PANTHER - 212 337 IPR010409 -
Vra5g1635 337 PANTHER - 1 206 IPR010409 -
Vra5g1635 337 MobiDBLite consensus disorder prediction 129 151 - -
Vra5g1635 337 MobiDBLite consensus disorder prediction 123 188 - -
Vra5g1635 337 PANTHER PROTEIN BASIC PENTACYSTEINE6 212 337 - -
Vra5g1635 337 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1635 Vra-Chr5 22781828 22785815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1635 65 337 BBR or BPC Transcription factor family AT5G42520 66.207 8.00e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vra5g1635 GAGA_bind 7e-111 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1635 - - gmx:100783502 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1635 5 22781828 22785815 Vra5g1635 5 22781828 22785815 ECH