Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1630 ATGGCAACAACGGTTATATTTTTCACCTTCAGACTGGTCGCTTTCTTCGCCATCTTAACCATAACCACAACCGCTGCGCAGAACACCACTGCTTTGGAGATTCAAGCCTTAACAGCATTCAAGCTCAACCTCCATGACCCTCTGGGTTCCCTCGACGGTTGGGACCCTTCCACGCCCTCCGCACCCTGCGACTGGCGTGGCATTGTCTGTCTCAACAACCGAGTTCACCACCTCCGTCTTCCCCGTCTCCAGCTCGCCGGTGAACTCTCTCCCTCCCTTTCCAGCCTCCTCCAACTCCGTAAACTCAGCCTCCACTCCAACAATCTCAACTCCTCCATTCCTCCCTCCCTCTCTCAATGCCTCTTCCTACGCGCAGTTTACCTCCACAACAACCGCCTCTCCGGTCACCTTCCTCGACAGCTTCTCAACCTCACTAACCTCCAAATTCTTAACCTTGCGCGCAATCTATTCACCGGAGAAATCCCAGACCAACTTTCCGTCTCCCTACGTTTTTTAGACCTATCTGATAATGCCTTCTCCGGCGATATTCCAGCTAATTTCTCGTCCAAATCTCAGCTTCAACTCATGAATCTCTCTTACAACAGGTTGAGTGGAGGAATTCCTGGTTCACTGGGAAAGTTGCAAAATTTGCAATATCTTTGGTTAGATTCTAACCATATTCATGGAACTTTTCCGTCTGCCCTTGCCAACTGTTCCTCTCTGGTACACCTTAGTGCAGAGGACAATGTTCTGACCGGACTTCTTCCTCTTACCTTAGTAACCATACCAAAACTTCAGATACTTTCACTTTCACGGAACCAACTTTCCGGTTTGGTTCCCAAGTCTGTTTTCTGCAACACTCACCTACAAAGCTTGAATCTTGGTTTCAATTCCTTTACGGGCTTTTCTGCACCTCAAAGTGAAGAATGCAATAGTCTTTTAGAAATTTTGGATGTTCAAGAAAATCACATTGCTCCCACACGATTTCCCTGGTGGTTGACCCGGACTACGAAATCGTTGAAGGTGCTTCAGCTCTCGGGAAATTTCTTTACTGGTTCTCTCCCTGATGATATTGGTAACTTTTTAGCTTTGGAAGAGTTTAGAGTCGCGAATAATTTGTTATCCGGTGGTGTTCCGCCTAGCATTGTGAATTGTAGGTTGTTAAAGGTTTTTGATCTCGAGGGGAACCGTTTCTCTGGGTTAATTCCTGAATTTCTCGGGGATATGAGAAACCTGAAGGAGTTTTCTCTTGCAGGTAATCTTTTTACCGGTTCAATTCCTTCTAGTTTTGGAGCACTTTCTGCGCTCGAAACGCTTAATTTGAGTGACAATAAGTTGACCGGTGTGGTGCCTAAGGAGATCATGAAACTGGGGAACGTGACTGAATTAAATCTCAGCAATAACGAGTTTTCGGGTCAACTTTGGTCAAATATTGGGGACATGACGGGTTTGCAAGTTCTTAATTTGAGTCGATGTGGATTTTCAGGAAGGATTCCTGCTTCGTTGGGTAATTTAATGAGACTAACGGTTCTGGACTTGAGCAAGCAGAACCTCTCGGGTGAGTTGCCCCTTGAGGTTTTTGGGTTACCTAGTCTGCAAGTTGTGGCACTTCAAGAGAACCGTTTGAGTGGTAAAGTTCCTGAGGGGTTCAGCAGCATAGTTAGTCTGCGATATCTTAATCTCAGCTCTAATGAATATGTCGGTGACATTCCATTAACTTACGGGTTCCTCAGTTCTTTAATGATTCTCTCTCTGTCTCACAATGGTGTTTCTGGTGAAATACCGTCCGAGATTGGTGGTTGTTCGCAACTTGAAGTATTGCAGCTGCAGTCAAATTTTCTAGAGGGTAACATTCCTGGTGACATCTCTCGGCTATCTCATTTAAAGGAGCTTAATTTGGGGCACAATCGGTTGAAAGGTGATATCCCAGATGAGATATCAGAGTGCTCTGCCTTGAGTTCACTCTTGTTGGATGGTAATCACTTCACGGGTCGCATTCCCGGTTCCTTGTCAAAACTGTCTAATTTGACCGTGTTGAACCTTTCTTCAAATCTTTTGAATGGGGAAATTCCTGTTGAACTGTCAAGCATTTCTGGTTTGGATTATTTAAACGTGTCTAGTAATAATCTTGAGGGTGAGATTCCATACGTGCTTGGTGTCAGATTCAATAACCCTTCCGTGTTTGCAATGAACCAAGGTTTGTGCGGGAAGCCCTTGCAGAGGGAATGTGCAAAGGTGAGAAGGAGAAAGAAGAGAAGGCTAATAATGTTGATAGGCGTGGGAGTGGCTGGCTTGTGCCTTTTGGCGTTGTGTTGTTGTGGGTATGTTTACAGCCTCTTGAGGTGGCGGAAGAAGCTTCGAGAAGGGGTGACCGGTGAGAAGAAACGGAGCCCCTCAACAAGTGCAGGTAGTAGAGGGAGCGGTGAAAACGGAGGACCAAAGCTAGTGATGTTCAATAACAAGATCACGTACGCGGAGACATTGGAAGCAACGAGAAACTTCGATGAAGAGAACGTGTTAAGCAGGGGAAGATATGGCCTCGTGTTCAAAGCCTCCTTCCAAGATGGAATGGTTCTCTCCATTCGTCGCTTCGTGGATGGGTTCTTAGACGAGGCTAACTTCCGCAAGGAAGCAGAATCACTGGGCAAAGTGAAGCATCGAAACTTGACAGTTCTTCGTGGTTACTATGCGGGTCCACCAGATGTGAGACTTCTTGTGTATGACTACATGCCCAATGGAAACCTTGGCACACTGCTTCAAGAGGCGTCTCAGCAAGATGGCCATGTGCTAAATTGGCCAATGCGTCACCTCATTGCACTGGGAATTGCTCGAGGGCTAGCTTTCTTGCACTCGGTGCCAATAGTTCATGGTGACGTGAAGCCTCAAAATGTTCTTTTCGATGCGGATTTTGAAGCCCATTTGTCTGAATTTGGATTGGAGCGGTTGACAGTCGCAGCAGCGGCAGAAGCATCGTCGTCGTCGACTCCAGTAGGGACATTGGGGTATGTTTCAGCAGAAGCTGTATCGAGTGGGGTGGCGACAAAGGAGAGTGATGTTTATAGCTTTGGGATAGTGTTGTTGGAGATACTAACGGGGAAGAAACCGGTGATGTTCACGGAAGATGAGGACATAGTGAAGTGGGTGAAGAAGCAGTTACAAAGGGGCCAAATATCGGAGTTGTTGGAGCCAGGGTTGCTTGAGCTAGACCCAGAGTCATCGGAATGGGAAGAGTTTTTGTTGGGTGTGAAAGTGGGTCTCCTCTGCACAGCAACGGATCCTCTTGATCGACCGTCAATGTCGGACGTTGCTTTCATGCTCCAAGGTTGTCGGGTCGGACCGGAAATCCCATCATCGGCCGATCCCACAACACTACCTTCTCCTGCTTGA 3387 0.4697 MATTVIFFTFRLVAFFAILTITTTAAQNTTALEIQALTAFKLNLHDPLGSLDGWDPSTPSAPCDWRGIVCLNNRVHHLRLPRLQLAGELSPSLSSLLQLRKLSLHSNNLNSSIPPSLSQCLFLRAVYLHNNRLSGHLPRQLLNLTNLQILNLARNLFTGEIPDQLSVSLRFLDLSDNAFSGDIPANFSSKSQLQLMNLSYNRLSGGIPGSLGKLQNLQYLWLDSNHIHGTFPSALANCSSLVHLSAEDNVLTGLLPLTLVTIPKLQILSLSRNQLSGLVPKSVFCNTHLQSLNLGFNSFTGFSAPQSEECNSLLEILDVQENHIAPTRFPWWLTRTTKSLKVLQLSGNFFTGSLPDDIGNFLALEEFRVANNLLSGGVPPSIVNCRLLKVFDLEGNRFSGLIPEFLGDMRNLKEFSLAGNLFTGSIPSSFGALSALETLNLSDNKLTGVVPKEIMKLGNVTELNLSNNEFSGQLWSNIGDMTGLQVLNLSRCGFSGRIPASLGNLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENRLSGKVPEGFSSIVSLRYLNLSSNEYVGDIPLTYGFLSSLMILSLSHNGVSGEIPSEIGGCSQLEVLQLQSNFLEGNIPGDISRLSHLKELNLGHNRLKGDIPDEISECSALSSLLLDGNHFTGRIPGSLSKLSNLTVLNLSSNLLNGEIPVELSSISGLDYLNVSSNNLEGEIPYVLGVRFNNPSVFAMNQGLCGKPLQRECAKVRRRKKRRLIMLIGVGVAGLCLLALCCCGYVYSLLRWRKKLREGVTGEKKRSPSTSAGSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASFQDGMVLSIRRFVDGFLDEANFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTVAAAAEASSSSTPVGTLGYVSAEAVSSGVATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1630 1128 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1124 - -
Vra5g1630 1128 SUPERFAMILY L domain-like 507 734 - -
Vra5g1630 1128 Gene3D Ribonuclease Inhibitor 259 328 IPR032675 -
Vra5g1630 1128 Gene3D Ribonuclease Inhibitor 521 619 IPR032675 -
Vra5g1630 1128 SMART serkin_6 834 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1630 1128 SMART LRR_typ_2 673 697 IPR003591 -
Vra5g1630 1128 SMART LRR_typ_2 409 432 IPR003591 -
Vra5g1630 1128 SMART LRR_typ_2 96 120 IPR003591 -
Vra5g1630 1128 SMART LRR_typ_2 577 601 IPR003591 -
Vra5g1630 1128 SMART LRR_typ_2 625 649 IPR003591 -
Vra5g1630 1128 SMART LRR_typ_2 214 238 IPR003591 -
Vra5g1630 1128 SMART LRR_typ_2 262 286 IPR003591 -
Vra5g1630 1128 SMART LRR_typ_2 433 456 IPR003591 -
Vra5g1630 1128 SMART LRR_typ_2 457 481 IPR003591 -
Vra5g1630 1128 SMART LRR_typ_2 144 168 IPR003591 -
Vra5g1630 1128 SMART LRR_typ_2 529 552 IPR003591 -
Vra5g1630 1128 Pfam Protein tyrosine and serine/threonine kinase 837 1053 IPR001245 GO:0004672|GO:0006468
Vra5g1630 1128 Pfam Leucine rich repeat 168 227 IPR001611 GO:0005515
Vra5g1630 1128 Pfam Leucine rich repeat 603 662 IPR001611 GO:0005515
Vra5g1630 1128 Pfam Leucine rich repeat 507 564 IPR001611 GO:0005515
Vra5g1630 1128 Pfam Leucine rich repeat 410 469 IPR001611 GO:0005515
Vra5g1630 1128 Gene3D Ribonuclease Inhibitor 620 745 IPR032675 -
Vra5g1630 1128 Gene3D Ribonuclease Inhibitor 30 189 IPR032675 -
Vra5g1630 1128 Gene3D Transferase(Phosphotransferase) domain 1 910 1114 - -
Vra5g1630 1128 ProSiteProfiles Protein kinase domain profile. 834 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1630 1128 SUPERFAMILY L domain-like 33 324 - -
Vra5g1630 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 954 966 IPR008271 GO:0004672|GO:0006468
Vra5g1630 1128 Gene3D Phosphorylase Kinase; domain 1 809 909 - -
Vra5g1630 1128 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Vra5g1630 1128 SUPERFAMILY Protein kinase-like (PK-like) 813 1117 IPR011009 -
Vra5g1630 1128 PANTHER LRR RECEPTOR-LIKE KINASE 2 1124 - -
Vra5g1630 1128 MobiDBLite consensus disorder prediction 791 814 - -
Vra5g1630 1128 Gene3D Ribonuclease Inhibitor 190 258 IPR032675 -
Vra5g1630 1128 Pfam Leucine Rich Repeat 484 505 IPR001611 GO:0005515
Vra5g1630 1128 ProSiteProfiles Leucine-rich repeat profile. 627 649 IPR001611 GO:0005515
Vra5g1630 1128 Gene3D Ribonuclease Inhibitor 329 424 IPR032675 -
Vra5g1630 1128 Gene3D Ribonuclease Inhibitor 425 520 IPR032675 -
Vra5g1630 1128 Pfam Leucine Rich repeat 286 300 IPR001611 GO:0005515
Vra5g1630 1128 SUPERFAMILY L domain-like 329 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1630 Vra-Chr5 22733862 22737611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1630 1 1128 Receptor kinase-like Gene Family AT1G75640 63.573 0.0 1332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vra5g1630 PK_Tyr_Ser-Thr 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1630 - - gmx:100784917 1824.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1630 5 22733862 22737611 Vra5g1630 5 22733862 22737611 ECH