Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1627 ATGAAGATCCAGTGCGATGTCTGTAACGAACACCAGGCTTCTTTATTCTGCACCGCCGATGAAGCCGCCCTCTGCCACGACTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCCTCCAAACACCACCGCTTCTCTCTCGTCCACCCCTCTGCTAAGCATTTTCCTCTCTGTGATATTTGCCAGGAGAAAAGAGCTTTTGTGTTTTGTCAGCAAGATAGAGCAATTCTGTGCAAAGACTGTGACGTGTCCATTCATTCTGTCAACGAACTCACCAAGAACCATAGCAGGTTTCTTCTCACCGGGATCAAGTTCTCTACTTCCGCCATACCTTATTCTTCTTCTTCTTCTTCTTCATCGTCATCATCATCAGCAGCCAAGAAAAACACTGTTCTCGATACTTCACACCCACCTTCTAATCCTCCTTCAACACCCTCACGGCCTAAGCCTGGAGGAAACTTGCAAACAAATCAAGAACCTGGTTTCACTGGTAGCAGCATATCAGAGTACTTGATAAACACTATCCCAGGCATGAAGTTCGAAGATTTTCTCGATTCCCATTCAACCTTTGATTGCTCTAAGAATGGTGATGAGATGTTGTCGGTGTTTAGTGAGGGAAACATGGTTTCGTTCTCCTCTGGTGGGATCTGGGTTCCTCAAGCGGCACCTTCTTCTGGTGCATATTGGGAACAGATGGGTGAGCAGAATGGGTACAGAGAGGGAAGGAAAGGTAGCGTTAGATCAAGTTTGGAAGATGATAATAATTTCGTAGTTCCTCAGATGAGTCCTCCCAGCAACGTTTCGAAGAAATCCAGATTTCTTTGGTAG 828 0.4674 MKIQCDVCNEHQASLFCTADEAALCHDCDHRVHHANKLASKHHRFSLVHPSAKHFPLCDICQEKRAFVFCQQDRAILCKDCDVSIHSVNELTKNHSRFLLTGIKFSTSAIPYSSSSSSSSSSSSAAKKNTVLDTSHPPSNPPSTPSRPKPGGNLQTNQEPGFTGSSISEYLINTIPGMKFEDFLDSHSTFDCSKNGDEMLSVFSEGNMVSFSSGGIWVPQAAPSSGAYWEQMGEQNGYREGRKGSVRSSLEDDNNFVVPQMSPPSNVSKKSRFLW* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1627 275 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vra5g1627 275 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 272 - -
Vra5g1627 275 MobiDBLite consensus disorder prediction 113 137 - -
Vra5g1627 275 MobiDBLite consensus disorder prediction 250 269 - -
Vra5g1627 275 CDD Bbox1_BBX-like 5 47 - -
Vra5g1627 275 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Vra5g1627 275 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Vra5g1627 275 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 272 - -
Vra5g1627 275 MobiDBLite consensus disorder prediction 113 165 - -
Vra5g1627 275 Gene3D Classic Zinc Finger 1 95 - -
Vra5g1627 275 CDD Bbox1_BBX-like 57 100 - -
Vra5g1627 275 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vra5g1627 275 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vra5g1627 275 MobiDBLite consensus disorder prediction 238 275 - -
Vra5g1627 275 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vra5g1627 275 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1627 Vra-Chr5 22697311 22698904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1627 1 275 C2C2-CO-like Transcription Factor Family AT1G75540 42.136 6.93e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vra5g1627 zf-B_box 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1627 - - gmx:100785978 403.29