Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1625 ATGGCTCGTGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAAGTCACTTACTCCAAACGACGCAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAACTCCACGAGTACATTAGCCCCTCCACCTCAACAAAACACTTCTTTGATCAATACCAGATGACCCTAGGAGTTGATCTCTGGAACTCTCACTACGAGAATATGCAAGAGAACTTGAAGAAACTCAAAGAGGTCAATAAGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGCCTCATCGATCTGAACATGGAAGATCTCAGGCTCCTGGAGGAAGAAATGGACAAGGCCGCCAAGATTGTTCGTGAGCGTAAGTATAAAGTGATAACAAACCAGATTGACACCCAAAGGAAGAAGTTTAATAACGAGAAAGAAGTGCACAACAGACTCTTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGCATTGATAGAGAATGCAGGAGGAGAGTATGAGTCTGTGATCGGGTTCTCAAATTTAGGTCCACGCATGTTTGCCTTGAGCCTACAGCCAAGCCATCCTAATGCTCATAGCGGACCAACCTCTGATCTCACCACTTACCCCTTACTTTTCTAG 684 0.4591 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKHFFDQYQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLRLLEEEMDKAAKIVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALIENAGGEYESVIGFSNLGPRMFALSLQPSHPNAHSGPTSDLTTYPLLF* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1625 227 Coils Coil 151 171 - -
Vra5g1625 227 PANTHER APETALA3 1 224 - -
Vra5g1625 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vra5g1625 227 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vra5g1625 227 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra5g1625 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra5g1625 227 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Vra5g1625 227 Coils Coil 77 111 - -
Vra5g1625 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra5g1625 227 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra5g1625 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra5g1625 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Vra5g1625 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra5g1625 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra5g1625 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra5g1625 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1625 Vra-Chr5 22677383 22680914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1625 1 226 MADS-box Gene Family AT3G54340 56.034 1.18e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra5g1625 K-box 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1625 K09264 - gmx:547720 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1625 5 22677383 22680914 Vra5g1625 5 22677383 22680914 ECH