Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1622 ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGTCCACAAAACAAGGAAGAGGGAGAGGTGGAAAAAGGAGATAACAATATCAACAACAACAACGGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGTTCGAGATATGGCCAGAGTCGTATCAGCCTCAAGCTGCACCCCAAAACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGAGCGTGAACGAGGAGGAGGTTTCGCTCTGTGTGTCTGATGAGTCAACGAGATTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATGAACTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGATGCAGGACCTGCTGTAAGACCCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCAGCAGCCAAACGCCGCGAACGACAACAACAACTCGCTGCCTTGCAGAACCCACAACAATTCCGCCCAGAGAATATTCCCAAACGATATCATAGAGACACTCAGCTCGTCTCCGCTCCACAACCCATCGCAGGGTTAGAGCTGGGGCATTTCCCACCTGAAGTGAGCACTTCGGCGGTGTTTCGGTGTGTGAGAGTCAGCGCAGTGGACGCTTCAGATGAACAGTGCGCGTACCAAACCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCTGAAAGTTCTTACACCAGTGCAGCTACCGAGGGTTCCTCCGGTGGTGAACCCCGACAGCTTGGTTTAATGACCGCCGCAGCCACAGCCACAGCCACAACAGTAAGTGGAAACAACCCATTTGAGCCTTCACTTTACCCCGCTTCGCTGAATGCTTTCATGTCTGGTACACAATTCTTCCAACCCCCAAGGTCCTAA 951 0.5152 MAGFFSLGGTRRGGPQNKEEGEVEKGDNNINNNNGNNLLLFRNEEIYNKGFEIWPESYQPQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERQQQLAALQNPQQFRPENIPKRYHRDTQLVSAPQPIAGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAATEGSSGGEPRQLGLMTAAATATATTVSGNNPFEPSLYPASLNAFMSGTQFFQPPRS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1622 316 MobiDBLite consensus disorder prediction 1 35 - -
Vra5g1622 316 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 204 252 IPR006511 -
Vra5g1622 316 Pfam Domain of unknown function (DUF702) 115 253 - -
Vra5g1622 316 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 314 - -
Vra5g1622 316 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 117 159 IPR006510 -
Vra5g1622 316 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 314 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1622 Vra-Chr5 22653370 22656386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1622 1 316 C2H2 Transcription Factor Family AT1G75520 44.865 4.93e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vra5g1622 DUF702 1.1e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1622 - - gmx:100818588 443.351