Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1618 ATGCCTGATTCTGCCTCAGCCTCCTCTTCCACCAGAATGTGGTGCTCCGTCCCGGAACGGGTTCAGCTGCATGCGGCCATGTTGGCCCTGCAGTTTGGCTACGCCGGATTCCACGTCGTCTCTCGAGCTGCCCTTAACATGGGCATTAGCAAACTTGTTTTCCCAGTCTACCGCAACGTTATTGCCTTATTCCTGCTCCTTCCTTTTGCCTACTTCTTGGAAAAGAAGGAGAGGCCTGCCATTACTTTAAACTTCCTCTTACAGTTCTTTCTTCTGGCGCTTGTCGGAATTACTGCGAACCAAGGTTTCTACTTGCTTGGTTTGGACAACACATCACCGACCTTTGCATCGGCGATACAAAACTCTGTCCCAGCCATTACATTTCTGATGGCAGCCATATTCAGGATAGAGCAAGTTCGGCTGAATCGAAAGGATGGGATAGCGAAGGTTGCGGGAACAGTATTCTGTGTGGCTGGGGCATCGGTGATTACCCTATACAAGGGTCCAACAATATATAGCCCAACTCCACCACTGAACGCCAGCCCAGAAATTGACTTTGGTTCACTCTCGCTGGGAGATGCAAAGGGAAAGAACTGGACCCTCGGGTGCCTCTATCTTATAGGACACTGCTTGTCCTGGTCTGGTTGGCTTGTGTTGCAAGCACCTGTAATCAAGAAGTACCCTGCTCGTCTCTCTCTCACTTCCTATACATGTTTCTTTGGCCTCATACAATTCTTCGTCATTGCTCTCATCGTTGAAAGAGATGCTCAGGCTTGGATTTTCCAATCTGGTGGAGAAGTTTTCACCATCATCTATGCGGGAGTAGTGGCATCTGGAATTGCCTTCGCTGTTCAGACATGGTGCGTCGACAGAGGTGGCCCTGTGTTTGTTGCAGTGTATCAACCTGTTCAAACTCTTGTTGTCGCTATTATGGCTTCCCTTGCTTTAGGCGAAGAGTTCTACTTGGGAGGGATCATAGGAGCAGTGTTGATCGTTGTGGGACTGTACTTTGTGTTGTGGGGCAAAAACGAAGAGAGAAAGTTTGCAAGGGAACAGGCTGCGATTACGTCCACCCCAGAGCACAGTGGCATCAGATCCGCAAGTCATGCCAAAACATCACTCACTCAGCCTCTTCTCCTCCCTTCATCTACGGAGAACGTCTGA 1164 0.4948 MPDSASASSSTRMWCSVPERVQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALFLLLPFAYFLEKKERPAITLNFLLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAIFRIEQVRLNRKDGIAKVAGTVFCVAGASVITLYKGPTIYSPTPPLNASPEIDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSGWLVLQAPVIKKYPARLSLTSYTCFFGLIQFFVIALIVERDAQAWIFQSGGEVFTIIYAGVVASGIAFAVQTWCVDRGGPVFVAVYQPVQTLVVAIMASLALGEEFYLGGIIGAVLIVVGLYFVLWGKNEERKFAREQAAITSTPEHSGIRSASHAKTSLTQPLLLPSSTENV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1618 387 PANTHER WAT1-RELATED PROTEIN 15 353 IPR030184 GO:0016021|GO:0022857
Vra5g1618 387 PANTHER WAT1-RELATED PROTEIN 15 353 - -
Vra5g1618 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 344 - -
Vra5g1618 387 Pfam EamA-like transporter family 201 339 IPR000620 GO:0016020|GO:0016021
Vra5g1618 387 Pfam EamA-like transporter family 27 164 IPR000620 GO:0016020|GO:0016021
Vra5g1618 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 57 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1618 Vra-Chr5 22612099 22615157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1618 5 387 Nodulin-like Gene Family AT1G75500 74.550 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1618 - - gmx:100786714 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1618 5 22612099 22615157 Vra5g1618 5 22612099 22615157 ECH
Vra6g2064 6 37280825 37284219 Vra5g1618 5 22612099 22615157 PCT