Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1606 ATGGCATCATCAAGTGGAAACTCTTTTATTTGCACTAAGATTCAAAGCTCCGGCTCCGAAGGAGATTTACAGGTTCTGACGTTGGACGAGAGAAAGAACAAGAGAAAACAATCGAATCGTGAATCCGCGAGAAGATCTCGGATGCGAAAGCGTGACCACTTGGAAGACCTCAGGAAGCAAGTGTCAGAGTTCACAAAGGAGAACATAGAAATCATGGCGACCATAGACACGACCACACAACACTATCTGAAAACCGAAGCAGAAAATTGCGTTTTGAGGGCCCAGATGGGTGAGCTTAACCAACGGCTCCAATCTCTGAACGACATCATCGTGGACATCATCAACACAACCACCTCCTACGAAAGGGACTGTTATCTAACAAGTTCAGAATGTTTTAGCAACACGGTCTGTCTCAACCAACCTGTTTTTCAGTGGTGA 438 0.4543 MASSSGNSFICTKIQSSGSEGDLQVLTLDERKNKRKQSNRESARRSRMRKRDHLEDLRKQVSEFTKENIEIMATIDTTTQHYLKTEAENCVLRAQMGELNQRLQSLNDIIVDIINTTTSYERDCYLTSSECFSNTVCLNQPVFQW* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1606 145 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 80 IPR004827 GO:0003700|GO:0006355
Vra5g1606 145 CDD bZIP_plant_GBF1 32 82 IPR045314 GO:0003700|GO:0006355
Vra5g1606 145 SUPERFAMILY Leucine zipper domain 31 83 IPR046347 GO:0003700|GO:0006355
Vra5g1606 145 Gene3D - 29 85 - -
Vra5g1606 145 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 143 - -
Vra5g1606 145 MobiDBLite consensus disorder prediction 22 56 - -
Vra5g1606 145 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700|GO:0006355
Vra5g1606 145 SMART brlzneu 27 91 IPR004827 GO:0003700|GO:0006355
Vra5g1606 145 PANTHER BZIP TRANSCRIPTION FACTOR 1 143 - -
Vra5g1606 145 Coils Coil 40 74 - -
Vra5g1606 145 Pfam bZIP transcription factor 31 84 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1606 Vra-Chr5 22507881 22509023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1606 2 95 bZIP Transcription Factor Family AT1G75390 60.825 1.25e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra5g1606 bZIP_1 4.5e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1606 K25786 - gmx:778188 199.904