Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1605 ATGGCTACTCCTGTTGATCCTCCTAATGGAATCAAGAATGAAGGGAAGCATTATTTCTCCATGTGGCAAGCTCTGTTCGAGATTGATTCAAAGTACGTGCCAATCAAGCCCATTGGTCGCGGTGCATACGGGATCGTGTGCTCTTCTGTGAATAAAGAGACCAATGAGAAGGTTGCCATAAAAAAAATACAGAATGCCTTTGAGAACCGGATTGATGCTTTGAGAACTTTGCGCGAACTCAAGCTTCTTCGTCACCTTCACCATGAGAATGTAATTGCTTTGAAGGATATCATGATGCCTGTTCATAGGAATAGTTTCAAGGATGTCTATCTGGTTTATGAACTCATGGACACGGATTTGCACCAGATTATTAAGTCTTCTCAAGCACTGTCTAATGATCACTGCCAGTATTTCCTCTTTCAGTTGCTACGAGGCTTGAAATATCTTCATTCCGCTAACATCCTTCATCGTGACTTGAAACCTGGAAATCTTCTGATCAACGCAAATTGTGACCTAAAAATATGTGATTTCGGGTTAGCAAGAATTAACTGTAGCAAGAACCAGTTCATGACCGAGTATGTTGTGACAAGGTGGTACAGGGCACCAGAGCTCCTACTCTGCTGTGACAACTACGGGACATCAATTGATGTTTGGTCGGTTGGATGCATCTTTGCTGAGCTTCTTGGTCGAAAACCGATTTTCCCTGGTTCAGAGTGTCTCAACCAGCTGAAATTGATCATCAATATCCTTGGTAGTCAAAGGGAGGAGGACATCGAGTTCATTGATAATCCAAAGGCAAAAAAGTATATCAAATCACTTCCTTCTTCTCCTGGAACCCCCTTTTCGCGACTTTATCCTAATGCACATCCTTTGGCAATTGATCTTCTAGCAAAGATGCTTGTTTTCGATCCAACAAAGAGGATCAGTGTCACTGAAGCGCTTCAACACCCTTACATGGCCCCTCTTTACGATCCTAACTGTGACCCCCCAGCTGTGATTCCAATTGATCTTGACATTGATGAGGATCTGGGGGAAGAGATGATAAGGGAGATGATGTGGAAAGAAATGCTTCATTACCATCCTGAAGCTGCTGTAGAGAGTGCAGGGCTGTGCTGA 1116 0.4337 MATPVDPPNGIKNEGKHYFSMWQALFEIDSKYVPIKPIGRGAYGIVCSSVNKETNEKVAIKKIQNAFENRIDALRTLRELKLLRHLHHENVIALKDIMMPVHRNSFKDVYLVYELMDTDLHQIIKSSQALSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARINCSKNQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGSECLNQLKLIINILGSQREEDIEFIDNPKAKKYIKSLPSSPGTPFSRLYPNAHPLAIDLLAKMLVFDPTKRISVTEALQHPYMAPLYDPNCDPPAVIPIDLDIDEDLGEEMIREMMWKEMLHYHPEAAVESAGLC* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1605 371 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vra5g1605 371 CDD STKc_TEY_MAPK 26 361 - -
Vra5g1605 371 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1605 371 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1605 371 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Vra5g1605 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vra5g1605 371 SUPERFAMILY Protein kinase-like (PK-like) 25 326 IPR011009 -
Vra5g1605 371 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1605 371 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Vra5g1605 371 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Vra5g1605 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Vra5g1605 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1605 Vra-Chr5 22496191 22498548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1605 1 370 MAP Kinase Gene Family AT1G10210 85.676 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vra5g1605 Pkinase 2.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1605 K20535 - gmx:100798863 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1605 5 22496191 22498548 Vra5g1605 5 22496191 22498548 ECH