Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1603 ATGGAAGCCCCTGATTGTATGTATAGTGGTGAAGCATTGAGCATTCCTCCAAGCGCTCCTACCCCAAAACATTCTCTGTATTTGTCCAATCTCGACGACCAAAACTTCCTAAGGTTTTCCATCAAATACTTATACCTCTTCAACAACTCCTTGAACTTGGATCTCTTGAAGTCTTCTCTCGCCAGAGTTCTCGTCGATTATTACCCCTTGGCCGGTCGCTTGAGGACCGTCGATCATCACAAGCTCGAGGTCGATTGCAATGGACACGGTGCTCTCTTTGCCGAGGCTTTCACTCACACCACTCTTCATCAACTTCTCGAATCTTCCAAGACTCCAAACAAATCTTGGAACAAGTTCTTGTATAAGGTCCAAGCTCACACTTTCCTCGATGTTCCTCCTCTCGTAGTCCAGGTAACGAGGCTGGGTTGCGGGGGAATGATCCTGTGCACGGCGATCAACCACTGCGTATGCGACGGCATAGGGACGTCTCAGTTCCTACACGCCTGGGCACAGCTGACGAAAAAGCCAGAAGCGGAATTGACGATCATGCCCTTCCACTGGCGCCACGTGCTGAAACCCAGACACCCTGCGCAGGTAAAGTTCCGTCACGCTGGCTACACCGCACCAAACCCAACACCTCAAGTGGACCTCCTAAAGTTCATACAGTCACAGCCCTTGGTACCCGCATCCTTCACCCTCACCCCCTCCCACGTCCTTCGCCTCAAGAAAGAGTGTGTCCCTTCCCTCAAGTGCACCTCCTTCGAAACCGTTGCGGCCCACACCTGGCGCTCTTGGATTCGTTCGGTGGGCCAATCTCTACCGTCCAAACTCACTGTGAAGCTCCTTTTCTCGGTCAACGTTAGAAGAACAGTTGACCTTCCGCAGGGGTATTACGGGAACGGATTCTTGCTAGCGTGCGCTGAGAGCAGCGTGGAGGACTTGGTGGACGGTAACCTGCGCCACGGGGTGAAACTTGTGCAGGAAGCTAAGGCGAGGTTGAAAGAGGAGGAGTACGTAAGGTCAATGGTTGACCTGTTAGAGGACAAAACTGTTAAAACGGATCTTTCCACGAGTTTGGTTATTTCGCAGTGGTCTAGACTGGGGTTGGAAGAGGTGGATTTTGGGGAAGGGAAACCTTTGCATATGGGTCCTTTGACCAGTGATATTTACTGCTTGTTCTTACCCGTCGCCGGTGACGCTAATGCCGTCAGAGTGCTGCTGTCTGTCCCCGAGACCATGTTGGAACGTTTTCAGTATCACATGATGAGACAAAGTCGGGAAGAAAATGAAGAAAACGGATTCTTCTGA 1308 0.513 MEAPDCMYSGEALSIPPSAPTPKHSLYLSNLDDQNFLRFSIKYLYLFNNSLNLDLLKSSLARVLVDYYPLAGRLRTVDHHKLEVDCNGHGALFAEAFTHTTLHQLLESSKTPNKSWNKFLYKVQAHTFLDVPPLVVQVTRLGCGGMILCTAINHCVCDGIGTSQFLHAWAQLTKKPEAELTIMPFHWRHVLKPRHPAQVKFRHAGYTAPNPTPQVDLLKFIQSQPLVPASFTLTPSHVLRLKKECVPSLKCTSFETVAAHTWRSWIRSVGQSLPSKLTVKLLFSVNVRRTVDLPQGYYGNGFLLACAESSVEDLVDGNLRHGVKLVQEAKARLKEEEYVRSMVDLLEDKTVKTDLSTSLVISQWSRLGLEEVDFGEGKPLHMGPLTSDIYCLFLPVAGDANAVRVLLSVPETMLERFQYHMMRQSREENEENGFF* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1603 435 Pfam Transferase family 15 421 - -
Vra5g1603 435 Gene3D - 220 421 IPR023213 -
Vra5g1603 435 SUPERFAMILY CoA-dependent acyltransferases 39 184 - -
Vra5g1603 435 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 14 424 - -
Vra5g1603 435 PANTHER BNAC03G58010D PROTEIN 14 424 - -
Vra5g1603 435 Gene3D - 11 208 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1603 Vra-Chr5 22485165 22488014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1603 17 384 Monolignol Biosynthesis Gene Families AT5G48930 30.711 1.67e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1603 - - var:108341288 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1603 5 22485165 22488014 Vra5g1603 5 22485165 22488014 ECH