Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1586 ATGGGGTGGACACGAGAAGAGAATAGACGTTTTGAGGATGCTCTTGCGGTTCATGGCCCAGACGACCCAAATCGGTGGCAACATGTGGCCAACGCCGTGGGAGGAAAATCTGTAGAAGAGGTGAAAATGCACTATCAGATTCTCCAGGAAGATGTCATTCGAATTGAGCATGACCAAATTCCACTACCCAGGTACAGAGGTGCCGGCATCAATGGAAGACAAATTGACAATGAACAAAGGCGAATGAGGAATCTGACTCTCCGATGA 267 0.4831 MGWTREENRRFEDALAVHGPDDPNRWQHVANAVGGKSVEEVKMHYQILQEDVIRIEHDQIPLPRYRGAGINGRQIDNEQRRMRNLTLR* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1586 88 Pfam Myb-like DNA-binding domain 3 46 IPR001005 -
Vra5g1586 88 Gene3D - 2 50 - -
Vra5g1586 88 CDD SANT 3 46 IPR001005 -
Vra5g1586 88 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Vra5g1586 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 66 IPR044636 GO:0003700
Vra5g1586 88 SMART sant 3 51 IPR001005 -
Vra5g1586 88 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Vra5g1586 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Vra5g1586 88 ProSiteProfiles SANT domain profile. 1 45 IPR017884 -
Vra5g1586 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1586 Vra-Chr5 22386817 22388680 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra5g1586 Myb_DNA-binding 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1586 - - gmx:100789698 161.384