Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1582 ATGGCCTCAAGCCAAGGTTGGACACCGAAGCAGAACAAAAGATTTGAGAATGCCCTTGCCATCTTCGACGAGGACACCCCAGACAGGTGGCACAACCTGGCCAGAGCCGTCGGAGGAAAAACTGTGGAAGACGTCAAAAGGCATTATCAGAAGCTCGTCGAAGATGTGAAGCAGATCGAGGAAGGCCATGTGCCTCTTCCCAATTACCGAACTGTTTCAACCATGGCAAGCAGCATCAGAGGTTACGGTTACATCAATGAAGAAAACAGGATGAAGGGTCTGAGTCTGCAGTGA 294 0.5034 MASSQGWTPKQNKRFENALAIFDEDTPDRWHNLARAVGGKTVEDVKRHYQKLVEDVKQIEEGHVPLPNYRTVSTMASSIRGYGYINEENRMKGLSLQ* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1582 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 97 IPR044636 GO:0003700
Vra5g1582 97 SMART sant 3 55 IPR001005 -
Vra5g1582 97 CDD SANT 7 53 IPR001005 -
Vra5g1582 97 SUPERFAMILY Homeodomain-like 5 61 IPR009057 -
Vra5g1582 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 97 - -
Vra5g1582 97 Pfam Myb-like DNA-binding domain 6 52 IPR001005 -
Vra5g1582 97 Coils Coil 42 62 - -
Vra5g1582 97 Gene3D - 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1582 Vra-Chr5 22372480 22373848 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra5g1582 Myb_DNA-binding 6.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1582 - - vra:106761704 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1582 5 22372480 22373848 Vra5g1582 5 22372480 22373848 ECH