Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1569 ATGGCGGAGCCTCAGAATCCTTCACCATTCACACATTCTTCAGCAACGGAAATCGCACTACAACCACAACCTCTGCCACTTCCCAAGCGGAAGCGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACACTGTTGGCCACCAACCGTTTCGTCTGCGAGATCTGTAACAAAGGATTCCAGCGCGATCAAAACCTGCAGCTTCACCGGCGTGGTCACAACTTACCGTGGAAGCTGCGGCAGCGAGGCAGCAAGGAACCGCGGAAGAAGGCGTATGTGTGTCCCGAACCTTCGTGCGTCCACCACAACCCTGCCAGGGCGCTGGGCGACCTCACGGGCATCAAGAAGCACTTCTGCAGAAAACACGGCGAGAAAAAGTGGAAATGCGAACGCTGCTCTAAGAAATACGCTGTACAGTCGGACTGGAAAGCCCATACAAAAACTTGTGGCAGCAGAGAGTACCGCTGCGACTGCGGCACCTTGTTCTCTAGGAGGGATAGCTTCATCACGCACAGAGCATTTTGCGATGTACTAGCGCAAGAGAGCGCCAGGACCCAGGTCCAAGACCAGGCCCAGGCCCAGAATGTTAGCACCGGCAACGCTGATTTGGGTTCTTCGCCCCCTGCGCCTCCACTTACTCCCTCTGCGTCTGTGGTGTCGCCAACCTTGTCCATTCAGAGCTCAGAAATTCCAGAAAAGCCAAGGAAGCTGTCACCGATGTCTCCAAAAGCAACCTGCTTCGGGACAAGCAGCACCCCTTCCAGTTCCAGTTCTTGCACTACTGTTTTTGCAAGTGTGTTGGCACCGTCCACAATAACAACTCATTCACATTCTCAATCACCGTCGCCATCAACTTCCTCATTCTTCAACCTCGTGTCAAATTTGGCTCGCTCCGATAGCCCTAACGCCATCACCAATCTGAGAGAAACCACATCCCTCTCCCTCTCCTCACCGCTCTATCTCTCCAACAACGATCCTTCCCACTTCACAGCATCTCCTCAGCCTGCACTATCTGCCACTGCATTGCTCCAAAAAGCAGCTCAAATGGGTGCATCCACTGCTTCCCTTCTTCGTGGCTTAGGCTTAGCAACGACGTCACCGTCGTCCTTGGCCAAAGACGAGGGTTTTAACATTAGTGCAACCACAACAGCACAATGGAACGGCCAAATAAAGCAAGAGAATCAGCCCATGGTGGATAACCTTGGGCTTGGGCTTCCCTGTGGGAGTGATGTGATGATGGGCCCTTCTACCCCATTTGTGGGCCAGCCAATGACCCGTGATCTTCTCGGTCTTAGCATCGGTGGCGGAGCAAGCAGGGGTGGCCTCTCTGCTTTAGTCACGTCTTTCGGAGGGAACTTTGATTCACCCGGTGATGGAGGAGTTCACCGGTAG 1413 0.5364 MAEPQNPSPFTHSSATEIALQPQPLPLPKRKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHTKTCGSREYRCDCGTLFSRRDSFITHRAFCDVLAQESARTQVQDQAQAQNVSTGNADLGSSPPAPPLTPSASVVSPTLSIQSSEIPEKPRKLSPMSPKATCFGTSSTPSSSSSCTTVFASVLAPSTITTHSHSQSPSPSTSSFFNLVSNLARSDSPNAITNLRETTSLSLSSPLYLSNNDPSHFTASPQPALSATALLQKAAQMGASTASLLRGLGLATTSPSSLAKDEGFNISATTTAQWNGQIKQENQPMVDNLGLGLPCGSDVMMGPSTPFVGQPMTRDLLGLSIGGGASRGGLSALVTSFGGNFDSPGDGGVHR* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1569 470 MobiDBLite consensus disorder prediction 223 238 - -
Vra5g1569 470 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vra5g1569 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vra5g1569 470 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 18 463 - -
Vra5g1569 470 SMART c2h2final6 134 154 IPR013087 -
Vra5g1569 470 SMART c2h2final6 58 80 IPR013087 -
Vra5g1569 470 SMART c2h2final6 99 129 IPR013087 -
Vra5g1569 470 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g1569 470 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Vra5g1569 470 MobiDBLite consensus disorder prediction 193 211 - -
Vra5g1569 470 Pfam Zinc-finger of C2H2 type 58 80 - -
Vra5g1569 470 Gene3D Classic Zinc Finger 112 192 - -
Vra5g1569 470 Gene3D Classic Zinc Finger 38 105 - -
Vra5g1569 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 463 - -
Vra5g1569 470 MobiDBLite consensus disorder prediction 1 36 - -
Vra5g1569 470 MobiDBLite consensus disorder prediction 193 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1569 Vra-Chr5 22272937 22275880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1569 24 438 IDZ Gene Family AT5G66730 50.652 8.41e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra5g1569 zf-met 0.0034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1569 K25869 - gmx:100800089 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1569 5 22272937 22275880 Vra5g1569 5 22272937 22275880 ECH