Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1559 ATGGCAAGTGGGTTTGGGGAATCAACTGGGAGGTCACCCCCAAGCCCTTCGTACTTCAACAATAATAATAGCAATGATGCTGGCAATTTTGAGTGCAACATTTGCTTTGAATTAGCGCAAGACCCCATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCGGTTTGCAAGGCCCTTGTGGAGGAGGAGAAGCTGGTTCCCTTGTACGGGAGAGGAAAGACCTCCACTGATCCGAGATCCAAGTCTATTCCGGGCATGAATATCCCACATCGTCCGGCCGGTCAGAGACCTGAAACTGCTCCTCCACCGGAAACAAATAATTTTCCTCATGGGTTTGGATTTATGGGTGGCCTGGGAGGATTTGCGCCACCGCCAATGGCATCAACGAGATTTGGGAATTTCGGATTGCCTGCAGCTTTTGGTGGCTTTATACCGTCCTTTTTCAACTTTCAGTTGCATGGGTTTCACGATGGGGCCTTATATGGGGGAGCGTCTGGTTTTCCTCATGGGTTTTCTAATGCATTTCATGGTATCCATGCTCATGGATATCCTCTTGGCACTCATCAAGCCCCACAACATGGAGAGTTCCTTCAGTGTTTCAATGTTCACAAAGCAAATCACCGCACCGCCCGAGGTAATTTCCCCCCTTCCTCTAGTTCTATATGA 714 0.4818 MASGFGESTGRSPPSPSYFNNNNSNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGMNIPHRPAGQRPETAPPPETNNFPHGFGFMGGLGGFAPPPMASTRFGNFGLPAAFGGFIPSFFNFQLHGFHDGALYGGASGFPHGFSNAFHGIHAHGYPLGTHQAPQHGEFLQCFNVHKANHRTARGNFPPSSSSI* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1559 237 MobiDBLite consensus disorder prediction 86 118 - -
Vra5g1559 237 SUPERFAMILY RING/U-box 29 85 - -
Vra5g1559 237 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g1559 237 CDD RING-HC_AtRMA_like 30 74 - -
Vra5g1559 237 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Vra5g1559 237 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Vra5g1559 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 208 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vra5g1559 237 SMART ring_2 32 72 IPR001841 -
Vra5g1559 237 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Vra5g1559 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 86 IPR013083 -
Vra5g1559 237 PANTHER OS12G0636000 PROTEIN 2 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1559 Vra-Chr5 22176227 22178782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1559 30 208 C3H Transcription Factor Family AT1G19310 65.761 1.79e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1559 K10666 - gmx:100794086 371.703