Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1554 ATGGCATCAAGTTTAAAGGTATCTCCTCTATTGGTGCACCTACGATCCTCCTCATGCAACTGGAAGACCTCTTCCTCCATGCGTCCTTTTACAACCAAAGCTTCAGTCTCTGAAACGACGTCGTTGCCAGCGTCGGAGACGGCCAAGCTCCCGCTGCGCGAAATCCCCGGAGACTACGGTCTCCCTTTCATAGGACCCATCAACGACCGCCTCGACTTTTTCTACAACCAAGGCCGCAACGTCTTCTTCCAATCCCGCGTCAAGAAGTACAACTCCACCGTCTTCCGCGTCAACATGCCACCTGGCCCATTCATTAGTTCCGACCCAAAAGTCATCGTTTTGCTTGATGCCAAAAGCTTCCCCGTCCTCTTCGACGTGACAAAAGTAGAAAAACGTGACCTCTTCACCGGCACCTACATGCCTTCCCTCGAACTAACCGGCGGTTACCGAATCCTCTCCTACATCGACCCCTCCGAACCCAAACACGAAAAACTAAAACGCCTCCTCTTCTTCCTTCTCAAACACCGAAGCAGTCACGTCATTCCCGAGTTCCATTCAACCTACACAACCCTCTTCGAAACCCTCGAGAAAGAGCTGGCAGACAAAGGAAAAGCTGCTTTTCAAGATCCCAGTGACCAAGCAGCGTTTAACTTCCTGGCTCGCGCGCTTTTTGGCACCAACCCCTCCGACACAAAACTCGGAAGCGACGGCCCAGGTATAATACAAAGATGGGTTCTGCTCCAGCTTGGCCCTATTTTGACATTGGGCCTTCCCAAATTCATTGAAGATCCCATTCTTCACACCTTCCCCCTCCCTCCTTTTCTGATAAAGANCGACTACCAGAGGCTCTACGATTTCTTNTACGAGTCCGCNGGGGCTGTATTTGACGAAGCGTCGCGTCTTGGTATCTCCAAAGAAGAAGCGTGCCACAACCTGTTATTCGCCACGTGCTTTAACTCGTTTGGCGGAATGAAAATTTTATTCCCCAGCATGCTGAAGNGGATTGCCGGTGNGGGCTTGAAACTTCAAGCTCGGCTCGCGGAGGAGGTGAGGGCCGCCGTTAAGGCTAACGGCGGGAAGGTGACGATGGCGGCGTTGGAAGCGATGCCGCTGGTGAAGTCGGTGGTGTACGAGGCGTTTCGCATTGAACCGCCGGTGCCGCTGCAGTATGGGAGGGCGAAGAGGGACTTGGTGATCGAGAGTCACGACAATGCGTTTTCGGTGAAGAAAGGGGAGATGCTGTTTGGGTATCAGCCGTTTGCGACTAAGGATCCGAAGATATTTGAAAATGCAGAGGAGTATGTGGCTGATAGGTTCCTGGGGGAGGGAGAGAAGCTGCTGA 1342 0.5246 MASSLKVSPLLVHLRSSSCNWKTSSSMRPFTTKASVSETTSLPASETAKLPLREIPGDYGLPFIGPINDRLDFFYNQGRNVFFQSRVKKYNSTVFRVNMPPGPFISSDPKVIVLLDAKSFPVLFDVTKVEKRDLFTGTYMPSLELTGGYRILSYIDPSEPKHEKLKRLLFFLLKHRSSHVIPEFHSTYTTLFETLEKELADKGKAAFQDPSDQAAFNFLARALFGTNPSDTKLGSDGPGIIQRWVLLQLGPILTLGLPKFIEDPILHTFPLPPFLIKXDYQRLYDFXYESAGAVFDEASRLGISKEEACHNLLFATCFNSFGGMKILFPSMLKXIAGXGLKLQARLAEEVRAAVKANGGKVTMAALEAMPLVKSVVYEAFRIEPPVPLQYGRAKRDLVIESHDNAFSVKKGEMLFGYQPFATKDPKIFENAEEYVADRFLGEGEKLL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1554 447 Pfam Cytochrome P450 342 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1554 447 PRINTS E-class P450 group IV signature 369 385 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1554 447 PRINTS E-class P450 group IV signature 406 420 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1554 447 PRINTS E-class P450 group IV signature 422 440 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1554 447 PANTHER ALLENE OXIDE SYNTHASE 1, CHLOROPLASTIC-LIKE 35 444 - -
Vra5g1554 447 SUPERFAMILY Cytochrome P450 51 444 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1554 447 Gene3D Cytochrome P450 50 447 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1554 447 PANTHER CYTOCHROME P450 26 35 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1554 Vra-Chr5 22128149 22129660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1554 1 447 Cytochrome P450 AT5G42650 62.775 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1554 K01723 - gmx:100807192 704.131