Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1552 ATGATCACTACACAAAAATACCTGCTTTTCTGCTTCTACTTAGTACTGGCTCAATTCATATTTTTCATTCCATTAACCAGTACCCAATTGCAGCATCACCAGTGCCGCCAAACATGCGGTTCCTCCGATCCTTTCCCTTACCCTTTCGGATTCTCCTCCGGGTGCTTAATCCGTTTGAATTGCACCGCCGGAAGACCCTCCGTCGGAGAATTCCCCATCCAAAAGGTCACCACATACAGCATAATCGTCAACATCGAAGCTCAGTGCAGTCGCCCGTTCGATAGTTTTGGCCAACTCTTCAGCCACAAATACGCGCCCACTTTGCGAAACGTGATTCTGCTAGACAATTGTACCGGAACTCCCTTGCCCTTTCCCTGCTCCATTTCGGGGAATCTGATCCGGACCCACTTCGAATCCGTGGGATGCAACGGCACAGTAGCGGACAATTTGACTTGCTACTTCGAGAACAAAACAAGCGGTTTCGTGAATCGCCGAGAATTGGAGTCTTCCGGGTGCAAGAACTTTATGTCATCTCTTTCATTCCCAGATGTTACAGACGTCTCCGGTGAGCCTCTGTCTTTGGAAGTAAATACAATCGAACTTGGATGGTGGGTCCAGGGAGATCGATGTCTTTGTTCTGATCACGCCAATTGTACCAAGCTTCAATCCCCGGTTGACGGAAAGCCCGGTTTCAGCTGTGGCTGCCGTGACGGCTTCGTCGGCGACGGGTTTTTGGCCGGAACAGGTTGCCAGAAAGCCTCGTCATGCAACCCAGCGAAGTACTTATCTGGCCGATGTGGAGGAACAACCAGATTCGTTGTCTTAATCGGAGGGTTTGTTATCGCCGTTTCACTGATTATTACTGCGGGTTCACTATGCTGTTTCTTCCGCCGGCGCACCAAATTGAGAGTCACAAAGAGCACAAAAAGACGATTAACCGAAGCCACCGGAAACAATGGTGTTCCTATCTATCCCTACAAAGACATTGAGAGAGCCACGAATAGTTTCTCAGAGAAACAACGGTTGGGAACTGGGGCGTACGGCACGGTTTATGCAGGGAAATTGTACAGCGATGAATGGGTTGCCATCAAAAGGATAAAACACAGAGACACTGACAGTATTGAACAAGTAATGAACGAGATCAAGCTCCTGTCCTCTGTGAGCCACACCAATTTAGTTCGCTTGTTGGGTTGCTCCATTGAACACAGAGAACAAATCCTGGTGTACGAGTTCATGCCCAATGGAACACTGAGTCAACACTTGCAGAAAGAGAGAGGACAAGGTCTTCCTTGGTCTGTTCGACTCACCATTGCCACTGAAACGGCACAAGCCATCGCGCATCTTCATTCAGCCATTAATCCCCCCATCTACCACCGAGACATCAAATCCAGCAATATACTTTTAGACCACAATTTCAGGTCAAAAGTGGCAGACTTTGGTCTTTCTAGACTTGGAATGACCGAAATATCGCACATTTCAACTGCTCCACAGGGAACTCCTGGCTATGTGGATCCACAATATCATCAAGATTTTCACCTCTCTGACAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTTGTTGAGATCATAACGGGGTTAAAAGTGGTAGACTTTTCACGTCCTCCTAATGAAGTGAACTTGGCTTCTCTTGCTGCAGATAGGATTGGAAAAGGGCTTTTGGATGAGATTATAGATCCATTCCTTGAACCCGAAGTAAGAAGTGACGCTGGAACCCTTTCCTCCATCCACAAGGTGGCTGAGTTGGCATTTAGATGCCTAGCGTTCCACAGGGACATGAGGCCTTCGATGACGGAAGTGGCTTGTGAGTTGGAGCAACTTAGGTTGAGTCAATGGACAACATTGGGAGACAACAACTGTGCAACCTCAACGGAGTTGTCCTCTTGCTCTTCCTCATCCAATGAAAGTGAGAAACCACTG 1938 0.4768 MITTQKYLLFCFYLVLAQFIFFIPLTSTQLQHHQCRQTCGSSDPFPYPFGFSSGCLIRLNCTAGRPSVGEFPIQKVTTYSIIVNIEAQCSRPFDSFGQLFSHKYAPTLRNVILLDNCTGTPLPFPCSISGNLIRTHFESVGCNGTVADNLTCYFENKTSGFVNRRELESSGCKNFMSSLSFPDVTDVSGEPLSLEVNTIELGWWVQGDRCLCSDHANCTKLQSPVDGKPGFSCGCRDGFVGDGFLAGTGCQKASSCNPAKYLSGRCGGTTRFVVLIGGFVIAVSLIITAGSLCCFFRRRTKLRVTKSTKRRLTEATGNNGVPIYPYKDIERATNSFSEKQRLGTGAYGTVYAGKLYSDEWVAIKRIKHRDTDSIEQVMNEIKLLSSVSHTNLVRLLGCSIEHREQILVYEFMPNGTLSQHLQKERGQGLPWSVRLTIATETAQAIAHLHSAINPPIYHRDIKSSNILLDHNFRSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKVVDFSRPPNEVNLASLAADRIGKGLLDEIIDPFLEPEVRSDAGTLSSIHKVAELAFRCLAFHRDMRPSMTEVACELEQLRLSQWTTLGDNNCATSTELSSCSSSSNESEKPL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1552 646 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
Vra5g1552 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 639 IPR045274 GO:0007166
Vra5g1552 646 Gene3D Transferase(Phosphotransferase) domain 1 412 631 - -
Vra5g1552 646 Pfam Protein kinase domain 336 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1552 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 26 639 - -
Vra5g1552 646 Gene3D Laminin 211 245 - -
Vra5g1552 646 ProSiteProfiles Protein kinase domain profile. 336 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1552 646 CDD STKc_IRAK 342 613 - -
Vra5g1552 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vra5g1552 646 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vra5g1552 646 SMART serkin_6 336 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1552 646 SUPERFAMILY Protein kinase-like (PK-like) 315 611 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1552 Vra-Chr5 22103568 22108185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1552 1 618 Receptor kinase-like Gene Family AT2G23450 52.941 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra5g1552 Pkinase 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1552 - - gmx:100777480 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1552 5 22103568 22108185 Vra5g1552 5 22103568 22108185 ECH