Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1548 ATGGCTTTCCACGAAAACCCTCTCGCGCAGTACACAGTACCACTTGCCATCTCATTCTTCTGTCTGTTGTTATTTCTCTTCGTTTTTTCATCTCTATCCAGAAAGCCCAAAAACCACAGTGCAGCAACGAGAAAAGCACCACCAGAAGCAAGTGGCGCGTGGCCTTTGATTGGCCACCTCCACCTCTTAGGGGGGTCGAAACCGCCACACGTTACTTTGGGCCANATGGCCGACAAATACGGTCCCATCTTCACCTTGCGTCTGGGAGCTCACAAAACGCTGGTTGTGAGCGANTGGAAAATGGCTAAAGAGTGCTTTACCGTCAACGACAGAGCTTTCGCTAGCCGTCCCAAATCCATGGCCTTTGAATTGTTGGGCTACAACTTTTCCATGATTGGGTTCAGCCCCTATGGTTCTTACTGGCGCCATGTGCGCAAAATCGCCACGGTGGAGCTCCTCTCTTCGCATCGCNTAGACACTCTGAAGCACGTGATNGATGCCGAAGTGAAAGCAGCAATGANGGACAGTTACANTTTGTGGTTGAAGAAGAAAGACGGCGGTTCNGAAATGAAGAGGTGGTTTGGGGACATAACATTGAACATTATGTTCCGGACGGTGGTAGGAAAACGTTTTGGNAGTGACGGCGGTGTGAATGAAGAGAACGAACAGCTACGAAAGGCATTGAGGGAGTTGTTTGATCTGAGCGGTTCATTCGCAGTTTCTGACTCTCTGCCATATCTAAGATGGTTAGATTTGGATGGTATCGAGAAGAAAATGAAGAGAACGGCAAAAGAGTTAGATGGGTTTGTTCAGAATTGGCTTGAAGAACACAAACGCAACAGAGGTTGTGATTTAGGTGAAGGGAAACATAACCAGGACCTGATGGACGTGCTTCTTGGGCTTGCCGAACAAGGCGAAGAGTTTGACGGTCGGGACCCTGACACCACAATCAAAGCTACGTGTATGGCTTTAATTTTGGCTGGTTCAGATACGACACCAGGAACATTGGTATGGGCTCTCTCGTTGCTTCTCAATAATCCTGAAACTCTGAAAAAAACGATCCATGAATTAGATACAGAAGTTGGGAGTGAAAGAATGGTAGAGATGTCAGATTTGAAGAAGCTAAAGTATCTTCATGCTATCATCAAAGAAACCCTGCGTTTATATCCAGCAGCACCACTTGGTGTGCCACATGAGTCCATGGAAAATTGCACAGTGGGTAGATATCACATAGTATCAGGCACACGTCTTTTGACTAATCTTTCAAAACTTCAGAGAGATCCATCTTTATATGAAAATCCCCTTAAATTTTGTCCAGAAAGATTTTTAACAACCCACAAGGAAGTGGATGTGAAGGGTCAACATTTTGAGTTGATTCCATTCGGTGCAGGTAGAAGGATGTGTCCTGGGATATCTTTCAGTCTCCAAGTTATGCAACTCACACTTGCTACCTTATTGCATGGGTTTGATATTGCAACCATTGATGGAAAACTTGTTGATATGGTTGAACAAATTGGCTTAACCAACATCAAAGCTTCTCCCCTCCAAGTTATTCTTACTCCCCGTCTATCTTCTCATATTTATGAATAA 1590 0.4472 MAFHENPLAQYTVPLAISFFCLLLFLFVFSSLSRKPKNHSAATRKAPPEASGAWPLIGHLHLLGGSKPPHVTLGXMADKYGPIFTLRLGAHKTLVVSXWKMAKECFTVNDRAFASRPKSMAFELLGYNFSMIGFSPYGSYWRHVRKIATVELLSSHRXDTLKHVXDAEVKAAMXDSYXLWLKKKDGGSEMKRWFGDITLNIMFRTVVGKRFGSDGGVNEENEQLRKALRELFDLSGSFAVSDSLPYLRWLDLDGIEKKMKRTAKELDGFVQNWLEEHKRNRGCDLGEGKHNQDLMDVLLGLAEQGEEFDGRDPDTTIKATCMALILAGSDTTPGTLVWALSLLLNNPETLKKTIHELDTEVGSERMVEMSDLKKLKYLHAIIKETLRLYPAAPLGVPHESMENCTVGRYHIVSGTRLLTNLSKLQRDPSLYENPLKFCPERFLTTHKEVDVKGQHFELIPFGAGRRMCPGISFSLQVMQLTLATLLHGFDIATIDGKLVDMVEQIGLTNIKASPLQVILTPRLSSHIYE* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1548 529 PANTHER CYTOCHROME P450 44 529 - -
Vra5g1548 529 SUPERFAMILY Cytochrome P450 52 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PANTHER CYTOCHROME P450 82C3-RELATED 44 529 - -
Vra5g1548 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Vra5g1548 529 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 Gene3D Cytochrome P450 32 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 Pfam Cytochrome P450 50 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS E-class P450 group I signature 77 96 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS E-class P450 group I signature 101 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1548 529 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1548 Vra-Chr5 22065565 22068244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1548 18 528 Cytochrome P450 AT4G31940 49.810 4.30e-174 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1548 - - gmx:100787630 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1548 5 22065565 22068244 Vra5g1548 5 22065565 22068244 ECH