Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1546 ATGGATCTTACGATTCAGTATCTGGTCGCAGCAGTTACAGCCGTAATCTTCATTTCTTTCCTCATCAAAAGGGGTACACCAGGTTCCACCCTCAAGCCACCGGAAGCAGCCGGTGGGTGGCCTTTGATCGGTCATCTTCACCTCTTAGGTGGTTCCACTGAGCCTCCTTACGTAACCTTAGGATCCTTAGCAGACAAGTATGGCCCAATATTCAGCATCCGAATTGGTGTGCATCCAGCTGTGTTGGTGAGCTCTTGGGAGTTAGCCAAGGAGTGTTTCACCACTCTCGACGTCGTTGTCTCTTCTCGCCCAAAATACACCGCCGCTAAACTCTTGGGCTACAACTATGCTAACTTTGGGTTTTCCCCTTACGGAGAATTCTGGCGTGAGATGCGCAAGATTACGGCTTCAGAGTTGCTCTCCACCACCCGCTTCGAACTTCTTAAGGATATTAGACACTCCGAGGTGAAGAGCTCCATCAAAGAATTGTACAGATCATGGGCGGACAAAGGAGGTGGATCACATTATTTGTCGGTGGAGATGAAGCAGTGGTTCGGAGACGTCAATCTCAACGTCATTCTGCGGATGATTTCGGGAAAGCAATACTCTACCAAAAGTGAAGACGAGCAACAGGTGCGACGGATTCGGAAGGTTTTCAGAGAGTTCTTCCGTTTAACAGGGTTGTTTGTGGTTGGAGACGCCATTCCGTTTCTGGGGTGGCTTGATTTGGGAGGTGAAGTAAAGGAGATGAAAAAAACGGCCATGGAAATGGATACCATCGTTTCTGAATGGTTAGAAGAACATCGCCAGAAAAGAGACATTGATGAGAGCAAAACAGAGCAGGACTTCGTTGATGTTTTGTTGTCAGTCCTTAAAGGAGTCGACCTTGCCGGTTACGATGTCGACACTGTGATAAAAGCCACCTGCACGATGCTGATTGCTGGAGCAACTGATACCACAGCAGTTACCATGACATGGGCACTGTCGTTGTTGCTAAATAATCGGGACGCATTGAAGAAAGTAAAAGATGAATTGGATGAAAACGTGGGAAAAGAAAGATTAGTGAATGAATCGGATATAAACAAATTAGTTTATCTTCAAGCTGTGGTTAAAGAGACACTGCGATTGTATCCATCTGGGCCATTCTCTGGTCCACGCGAATTCACTGAAAATTGTACACTGGGTGGCTTCAACATCAAAGCGGGTACCAGATTTATATTGAACATTTGGAAATTACACAGAGATCCACGAATATGGTCAAATCCATTGGAGTTTGAACCAGAAAGGTTCTTGAGCAGGCACAGAAGTGTTGATCTGAAGGGTCAGCATTTTGAACTCCTTCCCTTTGGTGGTGGAAGGAGGTTGTGCCCTGGCATATCATTTGGCCTTCAAATGACACACTTGGCATTAGCTTCTCTTTTGCAGGCATTTGAAATCACCACACCATCCAATGCTCAAGTTGATATGAGTGCCACGTTTGGACTCACAAATATGAAAACCACCCCTCTCCAGGTTTTAGTCAGACCCGCTTTATCACATCACCTACTCTTTGCTCATCATGTTTAA 1566 0.4585 MDLTIQYLVAAVTAVIFISFLIKRGTPGSTLKPPEAAGGWPLIGHLHLLGGSTEPPYVTLGSLADKYGPIFSIRIGVHPAVLVSSWELAKECFTTLDVVVSSRPKYTAAKLLGYNYANFGFSPYGEFWREMRKITASELLSTTRFELLKDIRHSEVKSSIKELYRSWADKGGGSHYLSVEMKQWFGDVNLNVILRMISGKQYSTKSEDEQQVRRIRKVFREFFRLTGLFVVGDAIPFLGWLDLGGEVKEMKKTAMEMDTIVSEWLEEHRQKRDIDESKTEQDFVDVLLSVLKGVDLAGYDVDTVIKATCTMLIAGATDTTAVTMTWALSLLLNNRDALKKVKDELDENVGKERLVNESDINKLVYLQAVVKETLRLYPSGPFSGPREFTENCTLGGFNIKAGTRFILNIWKLHRDPRIWSNPLEFEPERFLSRHRSVDLKGQHFELLPFGGGRRLCPGISFGLQMTHLALASLLQAFEITTPSNAQVDMSATFGLTNMKTTPLQVLVRPALSHHLLFAHHV* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1546 521 PANTHER CYTOCHROME P450 82C3-RELATED 6 515 - -
Vra5g1546 521 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS E-class P450 group I signature 188 206 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS E-class P450 group I signature 408 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 Pfam Cytochrome P450 38 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 Gene3D Cytochrome P450 27 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1546 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Vra5g1546 521 Coils Coil 328 348 - -
Vra5g1546 521 PANTHER CYTOCHROME P450 FAMILY PROTEIN 6 515 - -
Vra5g1546 521 SUPERFAMILY Cytochrome P450 39 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1546 Vra-Chr5 22053222 22055476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1546 1 516 Cytochrome P450 AT4G31940 47.619 3.72e-180 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1546 - - gmx:100810391 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1546 5 22053222 22055476 Vra5g1546 5 22053222 22055476 ECH