Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1540 ATGGCCTCGAGCTTCTTTTTCTTACTCTCCCTATTCCTCTTCTCATCACTATCATCTTTCTCCCATGCACTTTCCGATGTTGAAGCCTCTTTCATTGCTCGTCGCCAAATGATGCATTTGGAGGAGAATGAGGACTTGCCCGACAACTACGTAAGTAACTACAAAACAAACCTAAAATTCTCTCACACCAGGCTAAAAGCTGCATACATTGCACTCGAGGCGTGGAAAAAAGCTATCTACTCAGACCCTTCAAATTTCACATCAAATTGGTCGGGCCAAGACGTTTGCTCCTACAATGGAGTTTTTTGTGCACAGGCTCTAGATGACAAAAATATCCAAGTTGTGGCTGGGATTGACCTTAACCATGCAGACATCGCAGGTTACATTCCCCCAGAAGTTGGTCTGTTAACTGACCTTGCACTTTTGCATATAAACTCCAACAGGTTTTGCGGGATCATCCCACACAGCTTTTCCAACCTTAAGATTCTCTATGAGCTAGACATCAGCAACAACCGCTTTGTCGGGCGGTTCCCTGAAATCGTGCTTGAAATTTCAGAACTCAGATACATTGACATCAGGTTCAATAACTTTGAAGGGGAATTGCCTCCAAAGCTTTTCACCAGAAGTTTCGACGCTATATTTTTGAACAACAACCGCTTCTCGTCCAATATTCCTGAGAACATAGGATCAACTCCAGCCACGGTTGTGGTTATTGCCAATAACAATTTCACAGGATGCGTGCCTTCCAGCGTCGGCCAAATGAAGTCGCTAAACGAGTTTGTTTTGGTCAACAACAACCTCACCGGTTGCTTGCCAGAAGAAATTGGAAAACTCGAAAAAGTTACGGTGTTTGACATAAGCTACAACAACTTCGTTGGCGTGTTGCCGAGGAACATGAATGGGCTTAAGAAGGTTGAGTACTTGTCCGTTTCACATAACAAGTTTACAGGTTTTGTCCCTCGTAATGTTTGCAGCTTGCCCCATTTGGTGAACTTCACATTCGCCGATAACTATTTCAACGGAGAGGAAGAAGGTTGCGTACCTCAAAAGAAAGAACCTCTGTTGGAGGATGAGAATAATTGCATACCAGATAGGCCAAAGCAAAAACAGTCAAACGTTTGTAACGAGGTGATAAGCAAGCCTGTGGATTGTAGCAAAACCAAGTGTGGCCATGGGGGCTCTCCATCTTCCGGTTCTCCATCAACGCCGTCTAAGTCACCCTCGCCACCTAAAAGTGAGAAACAGACACCATCACCACAGCCCAAATCTCCACCCACCCCTTCACAACAACAACAGCCCAGCTCTCCCCCTCCCACACCTAAGCCACAACCACCACCTACCCCAACTCCACAACAACAACAACCCACTCCCCCCACGCCTCAACAACCCACACCCTCACCACCACCACAGGATGATACCCACAGCGAATCACCCAAGAACCGAGAAAGAACTCCACCACCTGTCCACTCTCCTCCACCACCTGTCTACTCTCCTCCACCACCTGTCCACTCCCCACCACCCCCTGTTCAATCTCCACCCCCACCGGTTTACTCTCCACCCCCACCGGTTCACTCTCCTCCACCACCGGTTCAATCCCCTCCTCCCCCAGTGCATTCTCCACCACCACCCGTCCATTCTCCTCCCCCACCCGTTCACTCTCCTCCCCCACCCGTTCACTCTCCTCCCCCACCCGTCCAGTCTCCTCCTCCACCCGTCCAGTCTCCTCCTCCACCCGTCTTCTCTCCTCCTCCACCCGTCTTCTCTCCTCCCCCAGTTTACTCTCCACCTCCACCTGTTCTCTCTCCTCCTCCCCCAGTTCACTCTCCACCTCCACCTGTTCAATCTCCTCCTCCACCGGTTTACTCTCCTCCGCCACCTGTCCACTCTCCACCACCTCCAGTGTACTCTCCACCGCCACCAGTGCAGTCTCCACCACCTCCTACACCAACTCCTTCGCCTCCAGTCGACGACGTCGTCCTTCCCCCTCACTTCGGCTCTTCTTATGCTTCACCCCCTCCACCTATCATTGCCGGCTACTAG 2040 0.5059 MASSFFFLLSLFLFSSLSSFSHALSDVEASFIARRQMMHLEENEDLPDNYVSNYKTNLKFSHTRLKAAYIALEAWKKAIYSDPSNFTSNWSGQDVCSYNGVFCAQALDDKNIQVVAGIDLNHADIAGYIPPEVGLLTDLALLHINSNRFCGIIPHSFSNLKILYELDISNNRFVGRFPEIVLEISELRYIDIRFNNFEGELPPKLFTRSFDAIFLNNNRFSSNIPENIGSTPATVVVIANNNFTGCVPSSVGQMKSLNEFVLVNNNLTGCLPEEIGKLEKVTVFDISYNNFVGVLPRNMNGLKKVEYLSVSHNKFTGFVPRNVCSLPHLVNFTFADNYFNGEEEGCVPQKKEPLLEDENNCIPDRPKQKQSNVCNEVISKPVDCSKTKCGHGGSPSSGSPSTPSKSPSPPKSEKQTPSPQPKSPPTPSQQQQPSSPPPTPKPQPPPTPTPQQQQPTPPTPQQPTPSPPPQDDTHSESPKNRERTPPPVHSPPPPVYSPPPPVHSPPPPVQSPPPPVYSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVQSPPPPVFSPPPPVFSPPPVYSPPPPVLSPPPPVHSPPPPVQSPPPPVYSPPPPVHSPPPPVYSPPPPVQSPPPPTPTPSPPVDDVVLPPHFGSSYASPPPPIIAGY* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1540 679 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Vra5g1540 679 PRINTS Pistil-specific extensin-like signature 580 603 IPR003882 -
Vra5g1540 679 PRINTS Pistil-specific extensin-like signature 613 631 IPR003882 -
Vra5g1540 679 MobiDBLite consensus disorder prediction 402 472 - -
Vra5g1540 679 SUPERFAMILY L domain-like 74 345 - -
Vra5g1540 679 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 567 674 - -
Vra5g1540 679 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 5 591 - -
Vra5g1540 679 MobiDBLite consensus disorder prediction 484 658 - -
Vra5g1540 679 MobiDBLite consensus disorder prediction 384 679 - -
Vra5g1540 679 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 5 591 - -
Vra5g1540 679 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 567 674 - -
Vra5g1540 679 Gene3D Ribonuclease Inhibitor 235 362 IPR032675 -
Vra5g1540 679 Pfam Leucine rich repeat 139 197 IPR001611 GO:0005515
Vra5g1540 679 Gene3D Ribonuclease Inhibitor 69 234 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1540 Vra-Chr5 22024362 22026681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1540 17 507 Trihelix Transcription Factor Family AT2G15880 51.423 4.86e-161 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1540 - - gmx:100780677 611.298