Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra5g1539 | ATGGCGATTCGAGTTACCTTCTCCTTCTCTGGCTACGTAGCCCAGAATCTCGTCTCCTCCGCCGGCGTCCGCGTCGCCAATTCGCGATGCGTCCAAGAATGCTGGATCCGCACGCGCCTCTTCGGCGCCACCCAGAAAACGGAACTAGATTCTTCCGCCGGCGGAGTCCGAAATTTCTCCAGGTCCAACTGCTGGGCCCAGTCCACTTACTCCACCCTCGCCGGTGAGTTTCTCGGCGACGGCTGCAAGAGCCCAATCATCTTGGGCCTGATTTCAATTATGAAGTCAACAGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCTCCCTTTAAAACAAATTCCATCATTCCCTTCTTGCCCGGTTCGAAGTGGCTTCCTTGCAACGAGTCCATTCCCGACCCCACCTCGTGGGAGGTCGATAAAGGTGGCACGAAACACACCGTTCCGAACGATGTTCCCGGTTTTGGAAAGACTGGTTGGCTTTCGCGGCTTTTGAACGTGTCTTCTGAAGATGCTAAGGCTGCGTTCACTGCCATTACCGTTAGTTTGCTGTTCAAATCGTCTTTGGCTGAACCTAGATCCATTCCCTCCGCTTCTATGTATCCTACTCTTGAAGTAGGTGACCGTGTTTTAACCGAGAAGGTTTCGTTCCTCTTCAGGAAGCCTGATGTTTCGGATATAGTGATTTTTAAAGCGCCTCGTTGTTTGGAGGAGTATGGTTTTACTTCGTCTGATGTGTTTATAAAGAGGATTGTGGCTAAGGCAGGGGATTGTGTTGAGGTTCGAGATGGGAAACTACTGGTAAATGGTGTTGCTGAAGAACAGGAATTTGTATTAGAACCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCCGAAGGATATGTGTTTGTAATGGGAGATAATCGGAATAACAGCCTTGATTCTCACAACTGGGGTCCCCTCCCAATCGAGAACATTGTTGGTAGATCCATGTTTAGGTACTGGCCTCCATCTAAGGTGTCTGACTCTGACACCCTTCGTAAACTGCCTCATAGGAACAAATCTGTGGCAATTTCTTGA | 1080 | 0.4991 | MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWIRTRLFGATQKTELDSSAGGVRNFSRSNCWAQSTYSTLAGEFLGDGCKSPIILGLISIMKSTAGVSGSSAAAAGIFGISPFKTNSIIPFLPGSKWLPCNESIPDPTSWEVDKGGTKHTVPNDVPGFGKTGWLSRLLNVSSEDAKAAFTAITVSLLFKSSLAEPRSIPSASMYPTLEVGDRVLTEKVSFLFRKPDVSDIVIFKAPRCLEEYGFTSSDVFIKRIVAKAGDCVEVRDGKLLVNGVAEEQEFVLEPLAYEMDPMVVPEGYVFVMGDNRNNSLDSHNWGPLPIENIVGRSMFRYWPPSKVSDSDTLRKLPHRNKSVAIS* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra5g1539 | 359 | CDD | S26_SPase_I | 197 | 329 | IPR019533 | GO:0004252|GO:0006465 | |
| Vra5g1539 | 359 | TIGRFAM | sigpep_I_bact: signal peptidase I | 180 | 336 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Vra5g1539 | 359 | Gene3D | Umud Fragment, subunit A | 191 | 349 | - | - | |
| Vra5g1539 | 359 | PANTHER | SIGNAL PEPTIDASE I | 1 | 344 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Vra5g1539 | 359 | PANTHER | THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED | 1 | 344 | - | - | |
| Vra5g1539 | 359 | Pfam | Signal peptidase, peptidase S26 | 178 | 335 | IPR019533 | GO:0004252|GO:0006465 | |
| Vra5g1539 | 359 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 194 | 210 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Vra5g1539 | 359 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 253 | 265 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Vra5g1539 | 359 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 297 | 316 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Vra5g1539 | 359 | SUPERFAMILY | LexA/Signal peptidase | 195 | 340 | IPR036286 | - | |
| Vra5g1539 | 359 | ProSitePatterns | Signal peptidases I signature 3. | 302 | 315 | IPR019758 | GO:0004252|GO:0016021 | |
| Vra5g1539 | 359 | ProSitePatterns | Signal peptidases I serine active site. | 203 | 210 | IPR019756 | GO:0004252|GO:0016021 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra5g1539 | Vra-Chr5 | 22013378 | 22015939 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra5g1539 | 206 | 336 | MADS-box Gene Family | AT1G29960 | 33.835 | 3.08e-15 | 69.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra5g1539 | K03100 | - | gmx:100817525 | 617.076 |
Event-related genes