LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1539	ATGGCGATTCGAGTTACCTTCTCCTTCTCTGGCTACGTAGCCCAGAATCTCGTCTCCTCCGCCGGCGTCCGCGTCGCCAATTCGCGATGCGTCCAAGAATGCTGGATCCGCACGCGCCTCTTCGGCGCCACCCAGAAAACGGAACTAGATTCTTCCGCCGGCGGAGTCCGAAATTTCTCCAGGTCCAACTGCTGGGCCCAGTCCACTTACTCCACCCTCGCCGGTGAGTTTCTCGGCGACGGCTGCAAGAGCCCAATCATCTTGGGCCTGATTTCAATTATGAAGTCAACAGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCTCCCTTTAAAACAAATTCCATCATTCCCTTCTTGCCCGGTTCGAAGTGGCTTCCTTGCAACGAGTCCATTCCCGACCCCACCTCGTGGGAGGTCGATAAAGGTGGCACGAAACACACCGTTCCGAACGATGTTCCCGGTTTTGGAAAGACTGGTTGGCTTTCGCGGCTTTTGAACGTGTCTTCTGAAGATGCTAAGGCTGCGTTCACTGCCATTACCGTTAGTTTGCTGTTCAAATCGTCTTTGGCTGAACCTAGATCCATTCCCTCCGCTTCTATGTATCCTACTCTTGAAGTAGGTGACCGTGTTTTAACCGAGAAGGTTTCGTTCCTCTTCAGGAAGCCTGATGTTTCGGATATAGTGATTTTTAAAGCGCCTCGTTGTTTGGAGGAGTATGGTTTTACTTCGTCTGATGTGTTTATAAAGAGGATTGTGGCTAAGGCAGGGGATTGTGTTGAGGTTCGAGATGGGAAACTACTGGTAAATGGTGTTGCTGAAGAACAGGAATTTGTATTAGAACCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCCGAAGGATATGTGTTTGTAATGGGAGATAATCGGAATAACAGCCTTGATTCTCACAACTGGGGTCCCCTCCCAATCGAGAACATTGTTGGTAGATCCATGTTTAGGTACTGGCCTCCATCTAAGGTGTCTGACTCTGACACCCTTCGTAAACTGCCTCATAGGAACAAATCTGTGGCAATTTCTTGA	1080	0.4991	MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWIRTRLFGATQKTELDSSAGGVRNFSRSNCWAQSTYSTLAGEFLGDGCKSPIILGLISIMKSTAGVSGSSAAAAGIFGISPFKTNSIIPFLPGSKWLPCNESIPDPTSWEVDKGGTKHTVPNDVPGFGKTGWLSRLLNVSSEDAKAAFTAITVSLLFKSSLAEPRSIPSASMYPTLEVGDRVLTEKVSFLFRKPDVSDIVIFKAPRCLEEYGFTSSDVFIKRIVAKAGDCVEVRDGKLLVNGVAEEQEFVLEPLAYEMDPMVVPEGYVFVMGDNRNNSLDSHNWGPLPIENIVGRSMFRYWPPSKVSDSDTLRKLPHRNKSVAIS*	360

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra5g1539	359	CDD	S26_SPase_I	197	329	IPR019533	GO:0004252\|GO:0006465
Vra5g1539	359	TIGRFAM	sigpep_I_bact: signal peptidase I	180	336	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
Vra5g1539	359	Gene3D	Umud Fragment, subunit A	191	349	-	-
Vra5g1539	359	PANTHER	SIGNAL PEPTIDASE I	1	344	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
Vra5g1539	359	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	1	344	-	-
Vra5g1539	359	Pfam	Signal peptidase, peptidase S26	178	335	IPR019533	GO:0004252\|GO:0006465
Vra5g1539	359	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	194	210	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
Vra5g1539	359	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	253	265	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
Vra5g1539	359	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	297	316	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
Vra5g1539	359	SUPERFAMILY	LexA/Signal peptidase	195	340	IPR036286	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1539	Vra-Chr5	22013378	22015939	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g1539	206	336	MADS-box Gene Family	AT1G29960	33.835	3.08e-15	69.7

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g1539	K03100		-	gmx:100817525	617.076

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra5g1539	5	22013378	22015939	Vra5g1539	5	22013378	22015939	ECH

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