Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1520 ATGGTGGCAGCATCCGCATACGAGGAGAGTCGTCGCAAGAGAGTAGAGGAAAACAGAAAGAGAATGGAAGCTCTCAATCTCCCTCTCCTCTCTCGAGCTCTTCACAAATCTCCTTCTCCCAAATCTTCTCCGAAAAGCAGGACCACCGAAAAAGAGTTAGTTGTAGTGAGAAGATCTGGTCGTCTGGCGAACTTGCCTTCCCCTGTTTACAAAGAAATGCCTATTGTTAGCGTTTCTATACCTCGAAGATGTATTAGCAATAGGCACAGAGATCTTAGTAATAGAGTATACGCCTCAGATGAAGCCAGGATGGAAGCATTAGAACAAGCAGAAAATTTAATGTCGGGTTTAAAATCTGATATCCCAAGCTTCATAAAATCTATGCTCCAATCTCATGTCAGTGGAGGGTTTTGGCTGGGCCTTCCAGTTCATTTTTGCAAGAGCAATCTTCCAAAAGGAGACGAAGTGATGACTTTGATTGATGAAGATGGGAATGAGTATCCAACAATATATTTGAAACGCAAAACAGGACTTAGTGGGGGATGGAAAGGTTTTGCGGTTGCTCATGACCTAGCTGATGGGGACGCTTTAATTTTCCAATTAATCAACCGCACTACTTTCAAGGTGTACATTATTAGAGCGAATGGTCCTTCAAAGGATAAACAACTCGAGTGA 675 0.4281 MVAASAYEESRRKRVEENRKRMEALNLPLLSRALHKSPSPKSSPKSRTTEKELVVVRRSGRLANLPSPVYKEMPIVSVSIPRRCISNRHRDLSNRVYASDEARMEALEQAENLMSGLKSDIPSFIKSMLQSHVSGGFWLGLPVHFCKSNLPKGDEVMTLIDEDGNEYPTIYLKRKTGLSGGWKGFAVAHDLADGDALIFQLINRTTFKVYIIRANGPSKDKQLE* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1520 224 SUPERFAMILY DNA-binding pseudobarrel domain 118 215 IPR015300 -
Vra5g1520 224 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g1520 224 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 218 IPR044837 -
Vra5g1520 224 Gene3D - 98 216 IPR015300 -
Vra5g1520 224 CDD B3_DNA 122 213 IPR003340 GO:0003677
Vra5g1520 224 ProSiteProfiles B3 DNA-binding domain profile. 124 215 IPR003340 GO:0003677
Vra5g1520 224 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 4 218 - -
Vra5g1520 224 Pfam B3 DNA binding domain 124 214 IPR003340 GO:0003677
Vra5g1520 224 SMART B3_2 124 215 IPR003340 GO:0003677
Vra5g1520 224 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1520 Vra-Chr5 21855164 21859630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1520 6 215 B3 DNA Binding Superfamily AT3G19184 52.752 1.07e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra5g1520 B3 2.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1520 - - gmx:100797091 350.132