Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1513 ATGGTGGCAGTAGCAGTAGGAAGAGGCCTTCCTATTCAAACTCGCTCTTTATTCAATAGTAAGAGCATAGATAGAGCTTCACCAGGAGGAAGAGTCTCGTGGCTTGGGCATTCTGCTGCTGTCACTCCACGTTATAGACAAACTTGTGTAGCAGCGCAACAGCGACCTACATGGCTCCCAGGACTTGATCCCCCACCTTATCTTGATGGAACTCTGGCTGGAGATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCTGAAAACTTAAGGTGGTATGTGCAGGCAGAGCTGGTTCATTCCCGCTTTGCAATGCTTGGGGTATTGGGAATTCTTGTGACAGATCTGCTTCGCGTCACAGGAATTAGTAAGATACCGGTTTGGTTTGAAGCTGGTGCAGTAAAATACGACCTTGCCAATACACAGACACTCTTCATTGTTCAACTACTTTTGATGGGGTTTGCCGAAACAAAAAGGTACATGGATTTTGTTAGTCCTGGATCTCAGGCTAAAGAGGGGTCCTTCTTTGGACTGGAAGCTTCACTGGAAGGCTTAGAGCCAGGGTACCCAGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAACGCTCATGATTCGAAGCTTAAAGAGATTAAAAATGGTCGACTTGCAATGGTGGCAATGGTTGGCTTCTTTGTACAAGCTTCGGTGACTCACGTTGGACCAATTGACAACCTTGTGGAGCATCTTTCCAATCCATGGCATAAAACTATTATTCAGACCATTGCGAATTCTAGTTCGTAG 795 0.4616 MVAVAVGRGLPIQTRSLFNSKSIDRASPGGRVSWLGHSAAVTPRYRQTCVAAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPENLRWYVQAELVHSRFAMLGVLGILVTDLLRVTGISKIPVWFEAGAVKYDLANTQTLFIVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEASLEGLEPGYPGGPLLNPLGLAKDIKNAHDSKLKEIKNGRLAMVAMVGFFVQASVTHVGPIDNLVEHLSNPWHKTIIQTIANSSS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1513 264 Pfam Chlorophyll A-B binding protein 64 232 IPR022796 -
Vra5g1513 264 Gene3D Chlorophyll a/b binding protein domain 56 264 - -
Vra5g1513 264 SUPERFAMILY Chlorophyll a-b binding protein 50 261 - -
Vra5g1513 264 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC 9 260 - -
Vra5g1513 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 9 260 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1513 Vra-Chr5 21799360 21801261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1513 47 256 Chloroplast and Mitochondria Gene Families AT3G61470 46.445 9.55e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1513 K08911 - gmx:100804934 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1513 5 21799360 21801261 Vra5g1513 5 21799360 21801261 ECH