Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1507 ATGAATTTCAAGAGCTTCGGGAATGAAGCTGGTGGCGACGGAGGAGGGAGACCGGTGGGGAACTTCTCCCTCACGCGGCAGCCGTCGGTGTACTCGTTGACGTTCGACGAGTTCATGAACAGCATGGGAGGTTCCGGGAAGGACTTTGGCTCCATGAACATGGACGAGTTGCTCAAGAACATTTGGACGGCGGAGGAGGTCCAGACAATGGCTTCGGCGGGCGTTGCCACCGAGGACGTAGGAGCCGGCGTCAGCCATTTGCAACGGCAGGGGTCGCTGACGCTGCCGCGGACTCTGAGCCAGAAGACAGTGGATGAGGTTTGGAAGGACATTTCGAAGGATTACGGTGGGCACGGCGGGCCCAATCTTGCACAGACTCCGAGACAGCCCACTTTGGGAGAGATGACTTTGGAGGAGTTTCTGGTCAGAGCTGGTGTTGTTAGAGAAGACGCGAAGCCAAACGATGGCGTTTTCATGGATCTGGCTCGTGCAGGGAATAACAACGGTTTGGGGTTTGGGTTCCAGCAGATGAACAAGGTTTCTACTGCTACCGGTTTGATGGGTAACCGGTTGAGCAATGATCCACTGGTGGGTCTTCAGTCTCCTGCCAATTTGCCTTTGAGTGTTAATGGGGTGAGATCGTCCAGTCAGCAGCCACAGATGCAGAGTCCACAGTCTCAGCAACAGCATCAGCAGCAAATATTTCCTAAGCAGAGTCCTATGTCTTATGCAGCTGCTCAGATGCCCCAGGGAATGGTGAGGGGTGGGATTGTGGGACTCGGTGGTGATCAGGGTTTGAGCGTGCAAGGTGGAGGGATTGGTATGGTTGGTTTGGCACCTGGGTCAGTTCATGTTGCTACTGGGTCTCCTGCTGCTAACCAAATATCCGGTGATAAGATGACCAAGAGCAATGGTGATACCTCGTCTGTCTCACCGGTTCCTTACGTCTTTAACGGAGGCATGAGGGGGAGGAAGAGTGGAGGAGCCGTGGAGAAGGTGATAGAGAGGAGGCAGAGAAGGATGATAAAGAACAGAGAGTCAGCTGCCAGGTCAAGGGCACGCAAGCAGGCTTACACCATGGAATTGGAAGCAGAAGTTGCAAAGTTAAAAGAGGAGAACCAGGAACTTGTGAAAAAACAGGCTGAAATCATGGAAATTCAGAAAAATCAAGTTAAGGAAATGATGAATTTGCAACGAGAAGTCAAGAGAAGACGCCTCAGACGAACACAAACCGGTCCGTGGTAG 1245 0.5269 MNFKSFGNEAGGDGGGRPVGNFSLTRQPSVYSLTFDEFMNSMGGSGKDFGSMNMDELLKNIWTAEEVQTMASAGVATEDVGAGVSHLQRQGSLTLPRTLSQKTVDEVWKDISKDYGGHGGPNLAQTPRQPTLGEMTLEEFLVRAGVVREDAKPNDGVFMDLARAGNNNGLGFGFQQMNKVSTATGLMGNRLSNDPLVGLQSPANLPLSVNGVRSSSQQPQMQSPQSQQQHQQQIFPKQSPMSYAAAQMPQGMVRGGIVGLGGDQGLSVQGGGIGMVGLAPGSVHVATGSPAANQISGDKMTKSNGDTSSVSPVPYVFNGGMRGRKSGGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELVKKQAEIMEIQKNQVKEMMNLQREVKRRRLRRTQTGPW* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1507 414 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 334 385 IPR004827 GO:0003700|GO:0006355
Vra5g1507 414 MobiDBLite consensus disorder prediction 292 322 - -
Vra5g1507 414 MobiDBLite consensus disorder prediction 202 238 - -
Vra5g1507 414 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 13 414 IPR043452 GO:0003700|GO:0045893
Vra5g1507 414 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 13 414 - -
Vra5g1507 414 MobiDBLite consensus disorder prediction 292 314 - -
Vra5g1507 414 CDD bZIP_plant_BZIP46 336 390 - -
Vra5g1507 414 MobiDBLite consensus disorder prediction 1 23 - -
Vra5g1507 414 Pfam bZIP transcription factor 336 386 IPR004827 GO:0003700|GO:0006355
Vra5g1507 414 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 339 354 IPR004827 GO:0003700|GO:0006355
Vra5g1507 414 Gene3D - 334 390 - -
Vra5g1507 414 SMART brlzneu 332 397 IPR004827 GO:0003700|GO:0006355
Vra5g1507 414 Coils Coil 352 404 - -
Vra5g1507 414 SUPERFAMILY Leucine zipper domain 336 383 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1507 Vra-Chr5 21760869 21765828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1507 14 414 bZIP Transcription Factor Family AT1G49720 46.523 7.84e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra5g1507 bZIP_1 9.9e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1507 K14432 - gmx:100819313 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1507 5 21760869 21765828 Vra5g1507 5 21760869 21765828 ECH