Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1505 ATGGACACTGTGGAGCAGTTAAAGCCGGAGGAGGAGCAGCAGCAGCAGCAGATGGACATCACGACCATGATGATGCAACACCTCCCTCAATTCTCTGAACCCTATGGTGACACCAACATCATGGATGGTTTTCATCCCCAAGAAGGCTTCTACAGTAACAACAACAATATACGCAGTGGTAGTACCATGCCACTAGCAGATTTACTAGATAATAACCCTCCCAGCCCCTTACCTTGGTCCTCTTACTCATTCACGCACTTAATACCATCACCCACATCCTCCGCTATAATCTCTTTCTCCGACAACACCAACAACCCTACCCCAATAATGCTTCAACAAACACCAACCGAGGGTGCAACTGCAACTGCAACTGCAACTGCAAACCCTTACGGTGACAAGCGGAGCTCCATGGCGGCGATGAGGGAGATGATATTCAGGATGGCGGCGATGCAGCCGATACACATAGACCCTGAGTCGGTGAAGGCGCCGAAGCGGAGGAACGTGAAGATTTCGAAGGACCCTCAGAGTGTGGCAGCGCGGCACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATCCTGCAGAGACTGGTCCCTGGAGGAACCAAGATGGACACCGCGTCGATGTTGGATGAGGCAATTCACTACGTCAAATTTCTGAAAACGCAGGTTGGGGGAGAGGGAGCAATATGCAAGATGAATGCAGAAAGAAATGATGGTGGTGGTGTTTGGAACACCTGTACGGCCATAATGGGAGGGTTTCCGAGGCTTGGAAAAGTTGAAGACGACAAAGTGTTGACACGGTGTAAAAGAGGATGA 816 0.5074 MDTVEQLKPEEEQQQQQMDITTMMMQHLPQFSEPYGDTNIMDGFHPQEGFYSNNNNIRSGSTMPLADLLDNNPPSPLPWSSYSFTHLIPSPTSSAIISFSDNTNNPTPIMLQQTPTEGATATATATANPYGDKRSSMAAMREMIFRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVGGEGAICKMNAERNDGGGVWNTCTAIMGGFPRLGKVEDDKVLTRCKRG* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1505 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Vra5g1505 271 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 4 223 - -
Vra5g1505 271 SMART finulus 176 225 IPR011598 GO:0046983
Vra5g1505 271 Pfam Helix-loop-helix DNA-binding domain 180 219 IPR011598 GO:0046983
Vra5g1505 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 224 IPR036638 GO:0046983
Vra5g1505 271 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 4 223 IPR045843 GO:0003700|GO:0006355
Vra5g1505 271 Gene3D - 166 226 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1505 Vra-Chr5 21745599 21747755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1505 135 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 75.000 7.58e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g1505 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1505 - - vra:106761667 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1505 5 21745599 21747755 Vra5g1505 5 21745599 21747755 ECH