Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1502 ATGTGCAACAGTTCGATGAAGACGATGGGTGGCCCTGTAGTGCATAAGGTTTCAGAATGCTTCGTCAAAGCGAACCACTCCACCCAAGAATCAAACAAAATATGCCACTTAACACCTTGGGATATTGCCATGTTGTCTGCACACTATATCCAAAAGGGTCTTCTCTACAAGAAGCCTGCAACCCTTGTTGATGAACGTGATTTCATAGAAAATCTGTTGGAAAAGCTCAAACACTCTCTTTCTCTCACCCTCTCCCATTTCTATCCATTGTGTGGTCGCCTTGTCACCCACAAAACCAAAAACCCTCCCTTCTATACTGTTTTCGTCGATTGCACAAGTAATTCCGGAGCTAGATTCATCCATGCAACTTTAGATATGACAATATCTGATATCCTCTCTCCCGTTGATGTCCCACCCATTGTTCAATCATTGTTTGATCACGATAGAGCACTCAACCACGATGGTCACACCATGCCGCTGTTGTCCATCCAAGTAACCGAGCTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCACTCTCTTGGTGATGGCACTGCTTATTGGAATTTCTTCAACTCGTGGTCAGAGATCTTTCGAGCTCAAGCTCAAGGCCATGAACATGATGTTCCCATATCGCACCCTCCCATTCACAACCGCTGGTTTCCGAATGGTTGCGTTCCACCTATCAATCTTCCTTTCAAACACCACAACGAGTTTATCAGCAGGTATGAAGCACCCATGATGAGAGAGAGAATATTCCACTTTTCAGCAGAGTCTATTGCAAAACTGAAAGCAAAAGCCAACTCGGAATGCAACACCACAAAAATATCTTCGTTCCAATCACTGTCAGCACTTGTTTGGAGATGCATAACTCGGGCGCGGTGCTTGGCGCGTGATCAGAAAACAAGTTGCAAGTTATCGACAAACAACCGTACAAGAATGGATCCGCCACTGGCTGAGGAGTACTTTGGAAACTCGATTCATACACTGAATGCAGGAACAGCGACCTCAGGGGAATTGCTTGAGAATGGTCTGGGATGGGCAGCATGGAAGTTGCACATGGCTGTTATAAATCATAACGACAGAGTGGTGTTGGGATGGGTGAGAGAGTGGTTAAAGTGTCCTCTAATATATCAACTTGGTCGTTATTTTGATCCCTACTGTGTGATGATGGGAAGCTCACCCAGATTCAACATGTATGGGAATGAATTTGGAATGGGGAAAGCAGTAGCAGTTAGAAGTGGGTATGCCAACAAATTTGATGGAAAAGTTACGTCATATCCAGGCCATGAAGGAGGAGGAAGCGTGGATTTAGAAGTATGTCTTTCTCCACGTGTTATGACTGCGCTGGAGTCCGACCAGGAGTTCATGGATTCAGTTTCAACTTCCAATCCTCTCTAG 1404 0.4501 MCNSSMKTMGGPVVHKVSECFVKANHSTQESNKICHLTPWDIAMLSAHYIQKGLLYKKPATLVDERDFIENLLEKLKHSLSLTLSHFYPLCGRLVTHKTKNPPFYTVFVDCTSNSGARFIHATLDMTISDILSPVDVPPIVQSLFDHDRALNHDGHTMPLLSIQVTELVDGVFIGCSMNHSLGDGTAYWNFFNSWSEIFRAQAQGHEHDVPISHPPIHNRWFPNGCVPPINLPFKHHNEFISRYEAPMMRERIFHFSAESIAKLKAKANSECNTTKISSFQSLSALVWRCITRARCLARDQKTSCKLSTNNRTRMDPPLAEEYFGNSIHTLNAGTATSGELLENGLGWAAWKLHMAVINHNDRVVLGWVREWLKCPLIYQLGRYFDPYCVMMGSSPRFNMYGNEFGMGKAVAVRSGYANKFDGKVTSYPGHEGGGSVDLEVCLSPRVMTALESDQEFMDSVSTSNPL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1502 467 Gene3D - 16 226 IPR023213 -
Vra5g1502 467 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 460 - -
Vra5g1502 467 Gene3D - 237 454 IPR023213 -
Vra5g1502 467 Pfam Transferase family 18 458 - -
Vra5g1502 467 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 9 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1502 Vra-Chr5 21679395 21680988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1502 74 452 Monolignol Biosynthesis Gene Families AT5G48930 27.250 1.14e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1502 - - gmx:100787228 784.252