Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1500 ATGTTGTCTCCGACCATCTGCATAACGAGTGTTTGGATGATGAATTCCCCCGTCGTTCGAATCGTTTCAGAATGTTTTGTCAAGCCATCGGGCCAAGCTCAAGAATCAGATCGAATCTGCCATTTAACACCTTGGGATATTGCTATGCTGTCTTTGCACCACATCCAGAAGGGTCTACTCTTCCAGAAGCCAAAAACACTTGTTGATCAGCATCTTTTCATACAGAGTCTGTTGGAGAAACTCAAACACTCTCTTTCTGTAGCCCTCTTCCATTTCTATCCGTTGTCCGGTCGCCTTGTCACCCACAAAACCGAAGACCCTTCATCTTATACTATTTTTGTTGATTGCAGCAACAGCAGAGGAGCTAGATTCATCCATGCAACTTTGGATATGACAATATCTGACATCCTCTCCCCCGTTGATGTCCCTCCTATTGTGAACTCATTCTTTGACCTCGACAAAGCAGTCAACCATGATGGTCATATCATGCCACTCTTGTCGATTAAAGTTACTGAACTAGTGGACGGTGTTTTCATAGGTTGTACCATGAACCACAATATCGCTGATGGCACTTCTTATTGGAATTTCTTGAATGCATGGTCTGAGATCTTTCAAGCTCAAGCTGAAGGGAATGAACATGATGTTCCGATTTCATGTCATCCTATTCATAACCGGTGGTTTCCAGATGGTTGCGGCCCATTAATCAACCTTCCCTTCAAACATCACGACGAGTTTATTAGAAGATTTGAGCCACCAATTCTTAGGGGGAGAATCTTCCACTTTTCAGCAGAGTCTATTGCAAAACTGAAAGCAAGGGCAAATTCAGAGTCCAAAACCGCAAAAATCTCTTCGCTCCAATCCTTATCAGCTCATGTTTGGAGATGCGTAACACGGGCACGCCAGACGGCACACGGTGAGAGAACAAGTTGCAAATTGGCCATAAATAACCGGTCAAGAATGGAACCGCCTCTGCCGGCCGAGTACTTTGGAAGTGCTGTTAGTGTGGTGAGCGCAGAGAGCACTGTAGGGGAGTTGCTGGAGAATGATCTAGGATGGGCTGCATGGAAGGTGCACGTCGCTGTTGCCAACTATAACGACAGAGTGGTGAGAGACATGGTGAAAGAGTGGTTGCAGCATCCAGTGATTTACCAACATGGTATGCTCGTTGACTCCAGTTGTGTGATGATATCAAGTTCTCCCAGGTTCAACGTGTATGGAAATGAATTCGGAATGGGAAAAGCGGTGGCAGTTCTGAGTGGGTATGCCAACAAATTTGACGGGGACGTGATCGCACATCCAGGACGTGAAGGAGGAGGAAGCATAGATTTTGAAGTCTCCCTTTCACCTGATGTAATGTGTGCACTGGAATCAAATCAGGAGTTCATGGAAGCTGTTTCCGTGCCCAATCTTCTGCACAACCCAGTTCGTTGA 1431 0.4584 MLSPTICITSVWMMNSPVVRIVSECFVKPSGQAQESDRICHLTPWDIAMLSLHHIQKGLLFQKPKTLVDQHLFIQSLLEKLKHSLSVALFHFYPLSGRLVTHKTEDPSSYTIFVDCSNSRGARFIHATLDMTISDILSPVDVPPIVNSFFDLDKAVNHDGHIMPLLSIKVTELVDGVFIGCTMNHNIADGTSYWNFLNAWSEIFQAQAEGNEHDVPISCHPIHNRWFPDGCGPLINLPFKHHDEFIRRFEPPILRGRIFHFSAESIAKLKARANSESKTAKISSLQSLSAHVWRCVTRARQTAHGERTSCKLAINNRSRMEPPLPAEYFGSAVSVVSAESTVGELLENDLGWAAWKVHVAVANYNDRVVRDMVKEWLQHPVIYQHGMLVDSSCVMISSSPRFNVYGNEFGMGKAVAVLSGYANKFDGDVIAHPGREGGGSIDFEVSLSPDVMCALESNQEFMEAVSVPNLLHNPVR* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1500 476 Gene3D - 244 458 IPR023213 -
Vra5g1500 476 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 13 465 - -
Vra5g1500 476 Pfam Transferase family 19 462 - -
Vra5g1500 476 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 13 465 - -
Vra5g1500 476 Gene3D - 18 233 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1500 Vra-Chr5 21663682 21665749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1500 79 456 Monolignol Biosynthesis Gene Families AT5G48930 27.342 6.43e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1500 - - gmx:100788297 693.73