Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1499 ATGGCTACCCATGGCTTTCGTCGCATTTCCGAATGCTTCGTCCAGCCACACCGCCCCACTGAAATGTCAAACCAAATATGCCATTTAACACCTTGGGATATTGCAATGTTGAGTAGCCACTATATCCAGAAGGGTCTACTTTTCAAGAAGCCTTCAACACTTGTTCAACCAGATCATTTCACAGACAAACTGTTGGAGAAACTCAGACACTCTCTTTCTCTCACCCTCTCCCATTTCTATCCATTAGCGGGCCGTTTCGTCACCCACAAAACGCAAGACCCTCCCTTTTATGTTGTTTTCATTGATTGCAAAAACAGTGATGGAGCGAAATTCATCTATGCAACCTTGGACATGACCATATCTGACATACTCTCTCCCATTGACGTCCCACCCATTGTTCACTCATTCTTTGACCATCACAAAGCAGTCAACCATGATGGTCACACCATGCCATTGTTGTCCATCCAAGTCACTGAACTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCATGCTGTTGGTGATGGAACTTCTTACTGGAATTTCTTCAATACATGGTCTCAGATCTTTCAAGCTCATGATCAAGGACATGAATACGAAGTTTCCATTTCACAGCAACTCATTCACAATAGATGGTTTCCGAATGATTGCAGCCCACCAATCAATCTTCCTTTCAAACATCCCGACGAGTTTATCAGCAGATTTGAAGCGCCCTTTCTGAGAGAGAGAGTCTTCCACTTTTCGGTGGACTCTATTGCGAAACTGAAAGCAAAAGCCAACTCAGAGTGCAATACGACAAAAATCTCTTCATTCCAGTCATTATCAGCACTTGTTTGGAGAAGCATAACTCGAGCCCGCTCCCCACCATACGAGCAAAGAACAAGTTGCAAGTTGGCCATAAACAATCGACCAAGAATGGGAGCGGTGCCTGAGGAATACTTTGGAAACTCAATTTATGTGGTGAGTGCAGAAACAACGACAGGGGAATTGGTAGAAAATGGTATAGGATGGGCAGCGTGGAAGTTGCACTTGACTGTTGCAAAGCATAATGAGAGAGTGGTACTGGAATTGCTGAAAAAGTGGTTAGAATGTCCATTGATATATGACCTTGGTAGTTTCTTTGACCCCTACTGCGTGATGATGGGTAGCTCGCCCAGGTTTAGCGTGTATGGAAATGAATTTGGAATGGGAAAAGCAGTGGCCGCTAGAAGTGGGTATGCTAACAAGTATGATGGGAAAGTGACATCATATCCAGGTCGTGAAGGAGGGGGGAGCATTGATTTGGAAGTTTGCCTTTCGCCAGATAATATGAGAGCGCTCGAATCAGATCAAGAGTTCATGGATGCAACATCTCACTCCAGTCTCTTCTACTAG 1377 0.4437 MATHGFRRISECFVQPHRPTEMSNQICHLTPWDIAMLSSHYIQKGLLFKKPSTLVQPDHFTDKLLEKLRHSLSLTLSHFYPLAGRFVTHKTQDPPFYVVFIDCKNSDGAKFIYATLDMTISDILSPIDVPPIVHSFFDHHKAVNHDGHTMPLLSIQVTELVDGVFIGCSMNHAVGDGTSYWNFFNTWSQIFQAHDQGHEYEVSISQQLIHNRWFPNDCSPPINLPFKHPDEFISRFEAPFLRERVFHFSVDSIAKLKAKANSECNTTKISSFQSLSALVWRSITRARSPPYEQRTSCKLAINNRPRMGAVPEEYFGNSIYVVSAETTTGELVENGIGWAAWKLHLTVAKHNERVVLELLKKWLECPLIYDLGSFFDPYCVMMGSSPRFSVYGNEFGMGKAVAARSGYANKYDGKVTSYPGREGGGSIDLEVCLSPDNMRALESDQEFMDATSHSSLFY* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1499 458 Gene3D - 234 444 IPR023213 -
Vra5g1499 458 Gene3D - 9 220 IPR023213 -
Vra5g1499 458 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 5 451 - -
Vra5g1499 458 Pfam Transferase family 13 448 - -
Vra5g1499 458 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1499 Vra-Chr5 21660863 21662420 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1499 66 442 Monolignol Biosynthesis Gene Families AT5G48930 25.935 9.98e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1499 - - gmx:100789881 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1499 5 21660863 21662420 Vra5g1499 5 21660863 21662420 ECH