Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1497 ATGTCATGTTTCAGAACTCAGCAAAAGAAAGAGAAAGAGTCGAAAATGAGTACCCCCGCCATTCGACGCATTTCAGAATGCTTTGTGAAGCCTCGATCCTCCAACAAAATCTGCAATTTAGCTCATTGGGATATTGCTATGTTGTATACAAACTATATGAAGGGGTGTCTTCTCTTCAAGAAACCTGCGACCCTTATTCATGAACATAATTTCAAACAAAATCTGTTGGAGAAGCTAAAAACCTCTCTTTCTCTTACCCTCTCCCATTTTTATCCTTTGTCTGGTCGCCTTCTCACCCACAAAACCCAAAACCCTCCCTCTTATACTGTTTCTATTCATTGCAACAACAGTGATGGAGCTAGATTCATTCATGCAACTCTGGATATCACTATAGCTGATATTCTCTCCCCCCGTGACGTCCCACCCATTGTTCAATCATTCTTTGACCACCCCAAACCACTCAACCATGACCATCACACCATGCCGCTGTTGTCCATCCAAGTCACTGAACTAGTGGACGGTGTTAGCATAGGTTGTTCCATGAATCACGCTGTTGCTGATGGCATTTCGTATTGGAATTTCTTCAATACGTGGTCTCAGATCTTTCAAGCACAATCTCAATCTGAAAACCATGCATACGATGTTCCCATCTCACGCCAACCCATTCACGATCGTTGGTTTCCAAATAATTGTAGACCACCGATCTCTCTTCCTTACAAAGAGCATGACGAGTTTATAGAGAGATCTGAAAAACCCCTCATGAGGTGTAGAATTTTCCAATTTTCAGCAGAGTCTATTGCGAAACTGAAAGCAAAGGCCAACTCAGAATCCAATACCACAGTAATCTCTTCCTTCCAGTCATTATCAGCACTGGTTTGGAGATCCATAACTCGTGCGCGCTCCCCACCTTCTGACCAGAAAACAACTTTCAGATTAGCCGCAGACTGTCGATCAAGAATGAAGCCGCCTTTGGCAGAAGAATACTTTGGAAACTGCCTTCATGTAGTGAGTGCAGAAGCGACAACAAAGGAATTACTTAAGAATGGTATAGGATGGGCAGCACGGAAGTTGCATGTGGCTGTTACAGACCTTAACGATAGAGTGGTGCTAGAATCTATGGAAGGGTGGTTAAATTCTCCTTTCACAATTCAAATGGGTCGTTTCATTGACCCGTACAGCTTGTTGGTGGTTGGTTCGCCGAGGTTCAATATGTATGGATGTGAATTTGGAATGGGGAAAGCGGTGGCTTCTAGAAGTGGTTCTGCAAACAAACTTGATGGGAAGGTGTTGTCATACCCAGGGCGTGAAGGAGGAGGAAGCATTGATTTGGACATTTGCCTTTTGCCACACACAATGAGTGCTTTGGAATCAGACGAAGAGTTCATGAATGCAGTTACTGAGTTTGATCCCCTTTTGTTCTAG 1422 0.436 MSCFRTQQKKEKESKMSTPAIRRISECFVKPRSSNKICNLAHWDIAMLYTNYMKGCLLFKKPATLIHEHNFKQNLLEKLKTSLSLTLSHFYPLSGRLLTHKTQNPPSYTVSIHCNNSDGARFIHATLDITIADILSPRDVPPIVQSFFDHPKPLNHDHHTMPLLSIQVTELVDGVSIGCSMNHAVADGISYWNFFNTWSQIFQAQSQSENHAYDVPISRQPIHDRWFPNNCRPPISLPYKEHDEFIERSEKPLMRCRIFQFSAESIAKLKAKANSESNTTVISSFQSLSALVWRSITRARSPPSDQKTTFRLAADCRSRMKPPLAEEYFGNCLHVVSAEATTKELLKNGIGWAARKLHVAVTDLNDRVVLESMEGWLNSPFTIQMGRFIDPYSLLVVGSPRFNMYGCEFGMGKAVASRSGSANKLDGKVLSYPGREGGGSIDLDICLLPHTMSALESDEEFMNAVTEFDPLLF* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1497 473 Gene3D - 23 236 IPR023213 -
Vra5g1497 473 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 16 465 - -
Vra5g1497 473 Gene3D - 239 457 IPR023213 -
Vra5g1497 473 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 16 465 - -
Vra5g1497 473 Pfam Transferase family 33 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1497 Vra-Chr5 21647657 21649537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1497 27 456 Monolignol Biosynthesis Gene Families AT5G48930 26.580 1.64e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1497 - - vra:106761257 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1497 5 21647657 21649537 Vra5g1497 5 21647657 21649537 ECH