Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1496 ATGAGTAACCTCGCTGTTCGACGCATTTCAGAATGCTTTGTGAAGCCTCAATTCTCCAACCAAATCTGCAATCTAACTCCTTGGGATATGGTTTCGCTGTCTACAAACTATATCCAGAAGGGTCTTCTCTTCAAGAAACCTGCAACCCTTATTGATGAACAACATTTCATACAAAATCTGTTGGAGAAGCTCAAACACTCTCTTTCTCTTACCCTCTTCCACTTTTATCCCTTGTCTGGTCGCCTTGTCACCCACAAAACCCAAAACCCTCCCTCTTATACTGTTTCTATTGATTGCAACAACAGTGATGGAGCTAGATTCATTCATGCAACTCTGGATATCACTATAGCTGATATCCTCTCCCCCTTTGACGTCCCACCCATTGTTCAATCGTTCTTTGACCACCACAAAGCAGTCAACCATGACGGTCACACCATGCCGCTGTTGTCCATCCAAGTCACTGAACTACTGGACGGTGTTTTCATTGGTTGTTCCATGAATCACGTTGTCGGTGATGGCACTTCGTATTGGAATTTCTTCAATACATGGTCTCAGATCTTTCAAGCACAATCTCAATCTGAAAACCATGAATACGATGTTCCCATCTCACGCCAACCCATTCACGATCGTTTGTTTCCACATAATTGTAGTCCACCAATCTCTCTTCCTTTCAAACATCATGACGAGTTTATTTGGAGATCTGAAACACCCTTGCTGAGAGAGAGATTTTTCCACTTTTCAGCAGAATCAATTGCCAAACTGAAAGCAAAGGCCAACTCAGAATCTAATACCACAAAAATCTCTTCCTTCCAATCATTATCAGCACTTGTTTGGAGATCCATAACTCGTGCGCGCTCCCCACCGTCTGACCAGAAAACAACATGCAGATTAGCCGCAAACAGTCGATCAAGAATGAAGCCGCCTGTGTCAGAAGAATACTTTGGAAACTGCGTTCATGCAGTGAGTGCAGAAACGACAACAGGGGAATTGCTTGAGAATGGTATAGGATGGGCAGCATGGAAGTTGCATGTGGCTGTTACAGACCTTAATGATAGAGTGGTGGTAGAATTTCTGGAAGGGTGGTTAGATTCTCCTTTCATAATTAAAATGGGTCGTTACTTTGACCCGTATAGCTTGTTGATGGGTAGTTCGCCCAGGTTCAATATGTATGGATGTGAATTTGGAATGGGGAAAGCGGTGGCTGCTAGAAGTGGTTATGCAAACAAATTTGATGGGAAGGTGTCGTCATACCCAGGGCGTGAAGGAGGAGGAAGCATTGATTTGGAAGTTTGCCTTTCGCCACACACAATGAGTGCTTTGGAATCAGATGAAGAGTTCATGAATGCAGTTACTAAGTTTGATCCCCTGTTGTTCTAG 1377 0.4357 MSNLAVRRISECFVKPQFSNQICNLTPWDMVSLSTNYIQKGLLFKKPATLIDEQHFIQNLLEKLKHSLSLTLFHFYPLSGRLVTHKTQNPPSYTVSIDCNNSDGARFIHATLDITIADILSPFDVPPIVQSFFDHHKAVNHDGHTMPLLSIQVTELLDGVFIGCSMNHVVGDGTSYWNFFNTWSQIFQAQSQSENHEYDVPISRQPIHDRLFPHNCSPPISLPFKHHDEFIWRSETPLLRERFFHFSAESIAKLKAKANSESNTTKISSFQSLSALVWRSITRARSPPSDQKTTCRLAANSRSRMKPPVSEEYFGNCVHAVSAETTTGELLENGIGWAAWKLHVAVTDLNDRVVVEFLEGWLDSPFIIKMGRYFDPYSLLMGSSPRFNMYGCEFGMGKAVAARSGYANKFDGKVSSYPGREGGGSIDLEVCLSPHTMSALESDEEFMNAVTKFDPLLF* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1496 458 Gene3D - 8 218 IPR023213 -
Vra5g1496 458 Pfam Transferase family 18 447 - -
Vra5g1496 458 Gene3D - 229 442 IPR023213 -
Vra5g1496 458 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 3 450 - -
Vra5g1496 458 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 3 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1496 Vra-Chr5 21634665 21636179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1496 62 441 Monolignol Biosynthesis Gene Families AT5G48930 26.847 1.32e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1496 - - vra:106761257 944.88