Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1495 ATGGTTACTCCTGTCGTTAGACGCATTTCAGAATGCTTCGTCAAACCGCATGGTTTAACCCAAGTTTCAAACCAAATATGTAATTTAACACCTTGGGATATTTCTATGTTGTCTGTGCACTATATCCAAAAGGGTCTACTCTTCAAGAAGCCTGAAACACTTATTGATGAACACGATTTCGTACAAAATCTGTTGGAGAAGCTCAAACACTCTCTTTCACTCACCCTTTTTCATTTCTATCCATTGTCTGGTCGCCTTGTTACCCACAAAACCCAAAACCCTCCCTCTTATACTGTTTCTGTTGATTGCAAAAACAGTGACGGAGTTAGATTCATTCATGCAACTCTTGATGTCACCATATCTGAACTACTCTCCCCAGTTGACACCCCATCCATTTTTCACTCATTTTTTGACCACCACAAAGCAGTCAACCATGACGGTCACACCATGCCGCTGTTGTCCATCCAAGTCACTGAATTGATCGACGGTGTTTTCATAGGTTGTTCAATGAATCACTCTCTCGGTGATGGCACTTCGTATTGGAATTTCTTCAATACATGGTCTCAGATCTTTGAAGCACAAGCTCAAGGCCAAGAATATGATGCTCCCATTTTTCGCCAACCTATTCACAATCGCTGGTTTCCAAATAATTGCAGTTCACCAATCAATCTTCCTTTCAAACATCACGACGAGTTTATCAGGAGGTATGAGGCGCCCTTGCTGAGAGAGAGAATCTTCCACTTTTCAGCAGAGTCGATAGGAAAACTGAAAGCAAAGGCAAACTCAGAGTCCAACAGTGATACTTGGAAAATCTCTTCGTTCCAGTCATTATCAGCACTTGTTTGGAGATCAATAATTCGAGCATGCTCCCTACCATATGAGCAAAAAACACGTTTTAACTTAACTGCAAACAATCGGTCAAGAATGGAGCCACCTCTGCCTCATGAATACTTTGGAAACTCGGTTGATAAGTTGAATGCGGAAACTACAGTTGGGGAATTACTTGAGAATGATCTAGGATGGGCTGCAGGGAAGTTGCACCTTGCTGTTACAAGGCACAATGACAAAGAGGTGTTGCATTTACTCCAAGAGTGGTTACAGTCTCCAGTGATCAAGCACACTAGTCAGCCTTTGGAGCCGTACGTTGTTTTGATAAGTAGCTCACCAAGGTTCAACATGTATGGGAGTGAGTTTGGAATGGGGAAAGCAGTGGCAGTGAGAAGTGGATATGCCAACAAATTTGATGGGAAGGTCACATCATTTCCAGGTCGTGAAGGAGGTGGAAGCATCGATTTGGAAATCTGCCTTTTACCACATATAATGACCTCTCTTGAATCAGACATAGAGTTTATGAATGCAGTTTCCTAA 1368 0.4232 MVTPVVRRISECFVKPHGLTQVSNQICNLTPWDISMLSVHYIQKGLLFKKPETLIDEHDFVQNLLEKLKHSLSLTLFHFYPLSGRLVTHKTQNPPSYTVSVDCKNSDGVRFIHATLDVTISELLSPVDTPSIFHSFFDHHKAVNHDGHTMPLLSIQVTELIDGVFIGCSMNHSLGDGTSYWNFFNTWSQIFEAQAQGQEYDAPIFRQPIHNRWFPNNCSSPINLPFKHHDEFIRRYEAPLLRERIFHFSAESIGKLKAKANSESNSDTWKISSFQSLSALVWRSIIRACSLPYEQKTRFNLTANNRSRMEPPLPHEYFGNSVDKLNAETTVGELLENDLGWAAGKLHLAVTRHNDKEVLHLLQEWLQSPVIKHTSQPLEPYVVLISSSPRFNMYGSEFGMGKAVAVRSGYANKFDGKVTSFPGREGGGSIDLEICLLPHIMTSLESDIEFMNAVS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1495 455 Pfam Transferase family 13 451 - -
Vra5g1495 455 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 454 - -
Vra5g1495 455 Gene3D - 234 447 IPR023213 -
Vra5g1495 455 Gene3D - 8 223 IPR023213 -
Vra5g1495 455 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1495 Vra-Chr5 21632553 21634103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1495 66 436 Monolignol Biosynthesis Gene Families AT5G48930 28.070 4.47e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1495 - - gmx:100795679 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1495 5 21632553 21634103 Vra5g1495 5 21632553 21634103 ECH